| Alias |
Alias is a synonym.
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| AllostericEffector |
The effector that elicits an allosteric response.
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| Allostery<T extends AllostericEffector> |
The allostery cooperative Effect.
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| Annotation |
An Annotations gives some information about a specific topic.
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| BioactiveEntity |
Molecules showing activity in a living system and which can interact with other molecules
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| CausalRelationship |
These relationship types denote a causal relationship, or the absence of a causal relationship between a subject and an object term
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| Checksum |
Checksum is a value for checking consistency of the data and can also be used for identifying objects.
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| Complex |
An interactor composed of interacting molecules that can be copurified.
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| Confidence |
A Confidence gives information about how reliable an object is.
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| CooperativeEffect |
A cooperative effect an interaction has on a subsequent interaction.
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| CooperativityEvidence |
The experimental method and corresponding publication from which a cooperative effect has been inferred.
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| CvTerm |
A controlled vocabulary term defined by an ontology.
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| Entity<F extends Feature> |
An entity which gives more information to a specific molecule (such as features, causal relationships)
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| Experiment |
Experiment in which some interactions has been determined.
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| ExperimentalEntity |
An experimental entity with experimental features
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| ExperimentalParticipantCandidate |
Interface for experimental participant candidates
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| ExperimentalParticipantPool |
A pool of experimental participants
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| Feature<P extends Entity,F extends Feature> |
Property of a participant that may interfere with the binding of a molecule.
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| FeatureEvidence |
The form of a molecule that was actually used to experimentally demonstrate the interaction, that may differ
from the sequence described by the identifying accession number.
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| FeatureModificationEffector |
The modification (feature) that elicits an allosteric response in an allosteric molecule.
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| Gene |
Interactor for genetic interactions
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| Interaction<T extends Participant> |
Interaction involving one to several molecules.
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| InteractionEvidence |
Interaction involving one to several molecules supported by experiments.
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| Interactor |
Molecule or complex of molecules that interacts with other molecules/complexes
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| InteractorPool |
InteractorPool represents a collection of potential interactors but we cannot determine which one interacts.
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| ModelledConfidence |
A modelled confidence is a confidence for a modelled interaction.
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| ModelledEntity |
An modelled entity with modelled features
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| ModelledFeature |
Biological property of a participant that may be involved with or interfere with the binding of a molecule.
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| ModelledInteraction |
An interaction that is not directly supported by experimental evidence but is based on homology statements, modelling, etc...
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| ModelledParameter |
A modelled parameter is a parameter for a modelled interaction.
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| ModelledParticipant |
Participant of a modelled interaction.
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| ModelledParticipantCandidate |
Interface for modelled participant candidates
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| ModelledParticipantPool |
A pool of modelled participant candidates
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| Molecule |
This interface represents a simple molecule such as a protein, nucleic acid, gene, small molecule but excludes
complexes and interactorSet
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| MoleculeEffector |
The participant that elicits an allosteric response in an allosteric molecule upon binding to that molecule.
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| NamedExperiment |
A named experiment is an experiment with a shortname, fullname and aliases
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| NamedInteraction<T extends Participant> |
A named interaction is an interaction having a fullname and aliases in addition to a shortname.
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| NamedParticipant<I extends Interaction,F extends Feature> |
A named entity is an entity having a short name and a fullname in addition to aliases.
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| NucleicAcid |
Polymers of nucleotides which can interact with other molecules
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| OntologyTerm |
Ontology term with definition, parents and children
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| Organism |
The organism is defined by a taxonomy identifier.
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| Parameter |
A numeric parameter e.g.
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| Participant<I extends Interaction,F extends Feature> |
Participant identified in an interaction
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| ParticipantCandidate<P extends ParticipantPool,F extends Feature> |
A participant candidate is part of a participant pool and contains the molecule which can interact plus some participant details such as
features and causal relationships
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| ParticipantEvidence |
Participant of an interaction which is supported by experimental evidences
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| ParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate> |
A pool of participants that can be grouped together as a single participant as they are interchangeable
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| Polymer |
A polymer is an interactor with a sequence
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| Position |
The position of a feature in the interactor sequence
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| Preassembly |
The pre-assembly cooperative effect.
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| Protein |
Polymer of amino acids which can interact with other molecules.
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| Publication |
A scientific publication which has been curated by an interaction database.
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| Range |
A feature range indicates the positions of a feature in the interactor sequence
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| ResultingSequence |
This interface is for representing a sequence portion that has been changed (by mutation, a variant, etc.)
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| Source |
Source of the data.
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| Stoichiometry |
The stoichiometry of a participant
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| VariableParameter |
A VariableParameter is a variable experimental parameter such as a drug treatment where several drug concentration were used
and that affects some interactions (dynamic interactions).
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| VariableParameterValue |
A value for a specific variableParameter in a specific experiment - eg - the concentration of a specific drug.
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| VariableParameterValueSet |
Set of variable parameter values applied together in a same experiment
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| Xref |
Cross reference to an external database/resource which can give more information about an object.
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