ResultingSequence (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

All Known Implementing Classes:

DefaultResultingSequence, XmlResultingSequence, XmlResultingSequence, XmlResultingSequence
```
public interface ResultingSequence
```
This interface is for representing a sequence portion that has been changed (by mutation, a variant, etc.)
Since:
```
20/05/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`String`	`getNewSequence()`	The resulting sequence portion.
`String`	`getOriginalSequence()`	The original sequence portion.
`<X extends Xref> Collection<X>`	`getXrefs()`	The collection of external database cross-references for this resulting sequence portion.
`void`	`setNewSequence(String sequence)`	Sets the new sequence of this object
`void`	`setOriginalSequence(String sequence)`	Sets the original sequence of this object

- Method Detail
  - getNewSequence
```
String getNewSequence()
```
    The resulting sequence portion. It can be null if we provide a valid Xref to a variant database such as dbSNP.
    
    Returns:
    
    The resulting sequence portion as a String
  - getOriginalSequence
```
String getOriginalSequence()
```
    The original sequence portion. It can be null if we provide a valid Xref to a variant database such as dbSNP.
    
    Returns:
    
    The original sequence portion.
  - getXrefs
```
<X extends Xref> Collection<X> getXrefs()
```
    The collection of external database cross-references for this resulting sequence portion. It cannot be null so if the ResultingSequence does not have any Xrefs, the method should return an empty collection
    
    Type Parameters:
    
    X - a X object
    
    Returns:
    
    The collection of xrefs for this resultingSequence object
  - setNewSequence
```
void setNewSequence(String sequence)
```
    Sets the new sequence of this object
    
    Parameters:
    
    sequence - : new sequence
  - setOriginalSequence
```
void setOriginalSequence(String sequence)
```
    Sets the original sequence of this object
    
    Parameters:
    
    sequence - : original sequence