Package psidev.psi.mi.jami.model.impl

Class DefaultModelledParticipant

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractEntity<F>

psidev.psi.mi.jami.model.impl.AbstractParticipant<ModelledInteraction,ModelledFeature>

psidev.psi.mi.jami.model.impl.DefaultModelledParticipant

All Implemented Interfaces:

Entity<ModelledFeature>, ModelledEntity, ModelledParticipant, Participant<ModelledInteraction,ModelledFeature>

Direct Known Subclasses:

DefaultNamedModelledParticipant, MitabModelledParticipant

public class DefaultModelledParticipant
extends AbstractParticipant<ModelledInteraction,ModelledFeature>
implements ModelledParticipant

Default implementation for ModelledParticipant Notes: The equals and hashcode methods have NOT been overridden because the ModelledParticipant object is a complex object. To compare ModelledParticipant objects, you can use some comparators provided by default: - DefaultModelledParticipantComparator - UnambiguousModelledParticipantComparator - DefaultExactModelledParticipantComparator - UnambiguousExactModelledParticipantComparator - ModelledParticipantComparator

Since:

13/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Participant

ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Constructor Summary

Constructors

Constructor	Description
DefaultModelledParticipant(Interactor interactor)	Constructor for DefaultModelledParticipant.
DefaultModelledParticipant(Interactor interactor, CvTerm bioRole)	Constructor for DefaultModelledParticipant.
DefaultModelledParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultModelledParticipant.
DefaultModelledParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultModelledParticipant.

Method Summary

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipant

addAllFeatures, addFeature, getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseXrefs, initialiseXrefsWith, removeAllFeatures, removeFeature, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant, toString

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractEntity

getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, initialiseCausalRelationships, initialiseCausalRelationshipsWith, initialiseFeatures, initialiseFeaturesWith, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Entity

addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from interface psidev.psi.mi.jami.model.Participant

getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Constructor Detail

DefaultModelledParticipant

public DefaultModelledParticipant(Interactor interactor)

Constructor for DefaultModelledParticipant.

Parameters:

interactor - a Interactor object.

DefaultModelledParticipant

public DefaultModelledParticipant(Interactor interactor,
                                  CvTerm bioRole)

Constructor for DefaultModelledParticipant.

Parameters:

interactor - a Interactor object.

bioRole - a CvTerm object.

DefaultModelledParticipant

public DefaultModelledParticipant(Interactor interactor,
                                  Stoichiometry stoichiometry)

Constructor for DefaultModelledParticipant.

Parameters:

interactor - a Interactor object.

stoichiometry - a Stoichiometry object.

DefaultModelledParticipant

public DefaultModelledParticipant(Interactor interactor,
                                  CvTerm bioRole,
                                  Stoichiometry stoichiometry)

Constructor for DefaultModelledParticipant.

Parameters:

interactor - a Interactor object.

bioRole - a CvTerm object.

stoichiometry - a Stoichiometry object.