Package psidev.psi.mi.jami.model.impl

Class DefaultNamedExperiment

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultExperiment

psidev.psi.mi.jami.model.impl.DefaultNamedExperiment

All Implemented Interfaces:

Experiment, NamedExperiment

public class DefaultNamedExperiment
extends DefaultExperiment
implements NamedExperiment

Default implementation for NamedExperiment. The equals and hashcode methods are not overriden.

Since:

13/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Experiment

INFERRED_BY_CURATOR, INFERRED_BY_CURATOR_MI, UNSPECIFIED_METHOD, UNSPECIFIED_METHOD_MI

Constructor Summary

Constructors

Constructor	Description
DefaultNamedExperiment(Publication publication)	Constructor for DefaultNamedExperiment.
DefaultNamedExperiment(Publication publication, CvTerm interactionDetectionMethod)	Constructor for DefaultNamedExperiment.
DefaultNamedExperiment(Publication publication, CvTerm interactionDetectionMethod, Organism organism)	Constructor for DefaultNamedExperiment.

Method Summary

Modifier and Type	Method	Description
Collection<Alias>	getAliases()	Getter for the field aliases.
String	getFullName()	Getter for the field fullName.
String	getShortName()	Getter for the field shortName.
protected void	initialiseAliases()	initialiseAliases
protected void	initialiseAliasesWith(Collection<Alias> aliases)	initialiseAliasesWith
void	setFullName(String fullName)	Sets the full name of the experiment
void	setShortName(String shortName)	Sets the short name of an experiment

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultExperiment

addAllInteractionEvidences, addAllVariableParameters, addInteractionEvidence, addVariableParameter, getAnnotations, getConfidences, getHostOrganism, getInteractionDetectionMethod, getInteractionEvidences, getPublication, getVariableParameters, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseConfidences, initialiseConfidencesWith, initialiseInteractions, initialiseInteractionsWith, initialiseVariableParameters, initialiseVariableParametersWith, initialiseXrefs, initialiseXrefsWith, removeAllInteractionEvidences, removeAllVariableParameters, removeInteractionEvidence, removeVariableParameter, setHostOrganism, setInteractionDetectionMethod, setPublication, setPublicationAndAddExperiment, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Experiment

addAllInteractionEvidences, addAllVariableParameters, addInteractionEvidence, addVariableParameter, getAnnotations, getConfidences, getHostOrganism, getInteractionDetectionMethod, getInteractionEvidences, getPublication, getVariableParameters, getXrefs, removeAllInteractionEvidences, removeAllVariableParameters, removeInteractionEvidence, removeVariableParameter, setHostOrganism, setInteractionDetectionMethod, setPublication, setPublicationAndAddExperiment

Constructor Detail

DefaultNamedExperiment

public DefaultNamedExperiment(Publication publication)

Constructor for DefaultNamedExperiment.

Parameters:

publication - a Publication object.

DefaultNamedExperiment

public DefaultNamedExperiment(Publication publication,
                              CvTerm interactionDetectionMethod)

Constructor for DefaultNamedExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

DefaultNamedExperiment

public DefaultNamedExperiment(Publication publication,
                              CvTerm interactionDetectionMethod,
                              Organism organism)

Constructor for DefaultNamedExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

organism - a Organism object.

Method Detail

initialiseAliases

protected void initialiseAliases()

initialiseAliases

initialiseAliasesWith

protected void initialiseAliasesWith(Collection<Alias> aliases)

initialiseAliasesWith

Parameters:

aliases - a Collection object.

getShortName

public String getShortName()

Getter for the field shortName.

Specified by:

getShortName in interface NamedExperiment

Returns:

a String object.

setShortName

public void setShortName(String shortName)

Sets the short name of an experiment

Specified by:

setShortName in interface NamedExperiment

Parameters:

shortName - : short name

getFullName

public String getFullName()

Getter for the field fullName.

Specified by:

getFullName in interface NamedExperiment

Returns:

a String object.

setFullName

public void setFullName(String fullName)

Sets the full name of the experiment

Specified by:

setFullName in interface NamedExperiment

Parameters:

fullName - : full name

getAliases

public Collection<Alias> getAliases()

Getter for the field aliases.

Specified by:

getAliases in interface NamedExperiment

Returns:

a Collection object.