Package psidev.psi.mi.jami.model.impl

Class DefaultNamedModelledInteraction

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractInteraction<ModelledParticipant>

psidev.psi.mi.jami.model.impl.DefaultModelledInteraction

psidev.psi.mi.jami.model.impl.DefaultNamedModelledInteraction

All Implemented Interfaces:

Interaction<ModelledParticipant>, ModelledInteraction, NamedInteraction<ModelledParticipant>

public class DefaultNamedModelledInteraction
extends DefaultModelledInteraction
implements NamedInteraction<ModelledParticipant>

Default implementation of Named modelled interaction

Since:

13/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.ModelledInteraction

ECO, ECO_MI

Constructor Summary

Constructors

Constructor	Description
DefaultNamedModelledInteraction()	Constructor for DefaultNamedModelledInteraction.
DefaultNamedModelledInteraction(String shortName)	Constructor for DefaultNamedModelledInteraction.
DefaultNamedModelledInteraction(String shortName, CvTerm type)	Constructor for DefaultNamedModelledInteraction.
DefaultNamedModelledInteraction(String shortName, Source source)	Constructor for DefaultNamedModelledInteraction.
DefaultNamedModelledInteraction(String shortName, Source source, CvTerm type)	Constructor for DefaultNamedModelledInteraction.

Method Summary

Modifier and Type	Method	Description
Collection<Alias>	getAliases()	Getter for the field aliases.
String	getFullName()	Getter for the field fullName.
protected void	initialiseAliases()	initialiseAliases
protected void	initialiseAliasesWith(Collection<Alias> aliases)	initialiseAliasesWith
void	setFullName(String fullName)	Sets the full name of the interaction

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultModelledInteraction

getCooperativeEffects, getEvidenceType, getInteractionEvidences, getModelledConfidences, getModelledParameters, getSource, initialiseCooperativeEffects, initialiseCooperativeEffectsWith, initialiseInteractionEvidences, initialiseInteractionEvidencesWith, initialiseModelledConfidences, initialiseModelledConfidencesWith, initialiseModelledParameters, initialiseModelledParametersWith, setEvidenceType, setSource

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractInteraction

addAllParticipants, addParticipant, clearPropertiesLinkedToChecksums, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseChecksums, initialiseChecksumWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseParticipants, initialiseParticipantsWith, initialiseXrefs, initialiseXrefsWith, processAddedChecksumEvent, processRemovedChecksumEvent, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Constructor Detail

DefaultNamedModelledInteraction

public DefaultNamedModelledInteraction()

Constructor for DefaultNamedModelledInteraction.

DefaultNamedModelledInteraction

public DefaultNamedModelledInteraction(String shortName)

Constructor for DefaultNamedModelledInteraction.

Parameters:

shortName - a String object.

DefaultNamedModelledInteraction

public DefaultNamedModelledInteraction(String shortName,
                                       Source source)

Constructor for DefaultNamedModelledInteraction.

Parameters:

shortName - a String object.

source - a Source object.

DefaultNamedModelledInteraction

public DefaultNamedModelledInteraction(String shortName,
                                       CvTerm type)

Constructor for DefaultNamedModelledInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

DefaultNamedModelledInteraction

public DefaultNamedModelledInteraction(String shortName,
                                       Source source,
                                       CvTerm type)

Constructor for DefaultNamedModelledInteraction.

Parameters:

shortName - a String object.

source - a Source object.

type - a CvTerm object.

Method Detail

initialiseAliases

protected void initialiseAliases()

initialiseAliases

initialiseAliasesWith

protected void initialiseAliasesWith(Collection<Alias> aliases)

initialiseAliasesWith

Parameters:

aliases - a Collection object.

getFullName

public String getFullName()

Getter for the field fullName.

Specified by:

getFullName in interface NamedInteraction<ModelledParticipant>

Returns:

a String object.

setFullName

public void setFullName(String fullName)

Sets the full name of the interaction

Specified by:

setFullName in interface NamedInteraction<ModelledParticipant>

Parameters:

fullName - : full name

getAliases

public Collection<Alias> getAliases()

Getter for the field aliases.

Specified by:

getAliases in interface NamedInteraction<ModelledParticipant>

Returns:

a Collection object.