Package psidev.psi.mi.jami.model.impl

Class DefaultParticipantPool

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractEntity<F>

psidev.psi.mi.jami.model.impl.AbstractParticipant<I,F>

psidev.psi.mi.jami.model.impl.AbstractParticipantPool<Interaction,Feature,ParticipantCandidate>

psidev.psi.mi.jami.model.impl.DefaultParticipantPool

All Implemented Interfaces:

Iterable<ParticipantCandidate>, Collection<ParticipantCandidate>, EventListener, EntityInteractorChangeListener, Entity<Feature>, Participant<Interaction,Feature>, ParticipantPool<Interaction,Feature,ParticipantCandidate>

public class DefaultParticipantPool
extends AbstractParticipantPool<Interaction,Feature,ParticipantCandidate>

Default implementation of ParticipantPool

Since:

29/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Participant

ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Constructor Summary

Constructors

Constructor	Description
DefaultParticipantPool(String poolName)	Constructor for DefaultParticipantPool.
DefaultParticipantPool(String poolName, CvTerm bioRole)	Constructor for DefaultParticipantPool.
DefaultParticipantPool(String poolName, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultParticipantPool.
DefaultParticipantPool(String poolName, Stoichiometry stoichiometry)	Constructor for DefaultParticipantPool.

Method Summary

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipantPool

add, addAll, clear, contains, containsAll, getInteractor, getType, initialiseComponentCandidatesSet, initialiseComponentCandidatesSetWith, isEmpty, iterator, onInteractorUpdate, remove, removeAll, retainAll, setInteractor, setType, size, toArray, toArray, toString

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractParticipant

addAllFeatures, addFeature, getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, initialiseAliases, initialiseAliasesWith, initialiseAnnotations, initialiseAnnotationsWith, initialiseXrefs, initialiseXrefsWith, removeAllFeatures, removeFeature, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractEntity

getCausalRelationships, getChangeListener, getFeatures, getStoichiometry, initialiseCausalRelationships, initialiseCausalRelationshipsWith, initialiseFeatures, initialiseFeaturesWith, setChangeListener, setStoichiometry, setStoichiometry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection

equals, hashCode, parallelStream, removeIf, spliterator, stream, toArray

Methods inherited from interface psidev.psi.mi.jami.model.Entity

addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setStoichiometry, setStoichiometry

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface psidev.psi.mi.jami.model.Participant

getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Constructor Detail

DefaultParticipantPool

public DefaultParticipantPool(String poolName)

Constructor for DefaultParticipantPool.

Parameters:

poolName - a String object.

DefaultParticipantPool

public DefaultParticipantPool(String poolName,
                              CvTerm bioRole)

Constructor for DefaultParticipantPool.

Parameters:

poolName - a String object.

bioRole - a CvTerm object.

DefaultParticipantPool

public DefaultParticipantPool(String poolName,
                              Stoichiometry stoichiometry)

Constructor for DefaultParticipantPool.

Parameters:

poolName - a String object.

stoichiometry - a Stoichiometry object.

DefaultParticipantPool

public DefaultParticipantPool(String poolName,
                              CvTerm bioRole,
                              Stoichiometry stoichiometry)

Constructor for DefaultParticipantPool.

Parameters:

poolName - a String object.

bioRole - a CvTerm object.

stoichiometry - a Stoichiometry object.