Package psidev.psi.mi.jami.tab.extension.datasource

Class MitabModelledBinarySource

java.lang.Object

psidev.psi.mi.jami.tab.extension.datasource.AbstractMitabSource<ModelledBinaryInteraction,ModelledParticipant,ModelledFeature>

psidev.psi.mi.jami.tab.extension.datasource.MitabModelledBinarySource

All Implemented Interfaces:

InteractionSource<ModelledBinaryInteraction>, InteractionStream<ModelledBinaryInteraction>, MIDataSource, MIFileDataSource, ModelledBinaryInteractionStream, ModelledInteractionStream<ModelledBinaryInteraction>, MIFileParserListener, MitabSource<ModelledBinaryInteraction>, MitabStreamSource<ModelledBinaryInteraction>, MitabParserListener

public class MitabModelledBinarySource
extends AbstractMitabSource<ModelledBinaryInteraction,ModelledParticipant,ModelledFeature>
implements ModelledBinaryInteractionStream

A mitab datasource that loads modelled binary interactions and ignore experimental details. It will load the full interaction dataset

Since:

08/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.datasource.MIFileDataSource

FILE_URI_PREFIX, URL_PREFIX_REGEXP

Constructor Summary

Constructors

Constructor	Description
MitabModelledBinarySource()	Constructor for MitabModelledBinarySource.
MitabModelledBinarySource(File file)	Constructor for MitabModelledBinarySource.
MitabModelledBinarySource(InputStream input)	Constructor for MitabModelledBinarySource.
MitabModelledBinarySource(Reader reader)	Constructor for MitabModelledBinarySource.

Method Summary

Methods inherited from class psidev.psi.mi.jami.tab.extension.datasource.AbstractMitabSource

close, getFileParserListener, getInteractions, getInteractionsIterator, getNumberOfInteractions, initialiseContext, onAliasWithoutDbSource, onAliasWithoutName, onAnnotationWithoutTopic, onEmptyUniqueIdentifiers, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingExpansionId, onMissingInteractorIdentifierColumns, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSeveralCreatedDateFound, onSeveralCvTermsFound, onSeveralFirstAuthorFound, onSeveralHostOrganismFound, onSeveralOrganismFound, onSeveralSourceFound, onSeveralStoichiometryFound, onSeveralUniqueIdentifiers, onSeveralUpdatedDateFound, onSyntaxWarning, onTextFoundInConfidence, onTextFoundInIdentifier, onXrefWithoutDatabase, onXrefWithoutId, reset, setFileParserListener, validateSyntax, validateSyntax

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.datasource.InteractionStream

getInteractionsIterator

Methods inherited from interface psidev.psi.mi.jami.datasource.MIDataSource

close, initialiseContext, reset

Constructor Detail

MitabModelledBinarySource

public MitabModelledBinarySource()

Constructor for MitabModelledBinarySource.

MitabModelledBinarySource

public MitabModelledBinarySource(File file)
                          throws IOException

Constructor for MitabModelledBinarySource.

Parameters:

file - a File object.

Throws:

IOException - if any.

MitabModelledBinarySource

public MitabModelledBinarySource(InputStream input)

Constructor for MitabModelledBinarySource.

Parameters:

input - a InputStream object.

MitabModelledBinarySource

public MitabModelledBinarySource(Reader reader)

Constructor for MitabModelledBinarySource.

Parameters:

reader - a Reader object.