Interface MitabSource<I extends Interaction>
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- All Superinterfaces:
InteractionSource<I>,InteractionStream<I>,MIDataSource,MIFileDataSource,MIFileParserListener,MitabParserListener,MitabStreamSource<I>
- All Known Implementing Classes:
AbstractMitabSource,DefaultMitabSource,LightMitabBinarySource,LightMitabSource,MitabBinaryEvidenceSource,MitabEvidenceSource,MitabModelledBinarySource,MitabModelledSource
public interface MitabSource<I extends Interaction> extends MitabStreamSource<I>, InteractionSource<I>
Interface for MITAB sources that can parse full MITAB files- Since:
02/05/14
- Version:
- $Id$
- Author:
- Marine Dumousseau (marine@ebi.ac.uk)
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Field Summary
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Fields inherited from interface psidev.psi.mi.jami.datasource.MIFileDataSource
FILE_URI_PREFIX, URL_PREFIX_REGEXP
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Method Summary
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Methods inherited from interface psidev.psi.mi.jami.datasource.InteractionSource
getInteractions, getNumberOfInteractions
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Methods inherited from interface psidev.psi.mi.jami.datasource.InteractionStream
getInteractionsIterator
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Methods inherited from interface psidev.psi.mi.jami.datasource.MIDataSource
close, initialiseContext, reset
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Methods inherited from interface psidev.psi.mi.jami.datasource.MIFileDataSource
getFileParserListener, setFileParserListener, validateSyntax, validateSyntax
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Methods inherited from interface psidev.psi.mi.jami.listener.MIFileParserListener
onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSyntaxWarning, onXrefWithoutDatabase, onXrefWithoutId
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Methods inherited from interface psidev.psi.mi.jami.tab.listener.MitabParserListener
onAliasWithoutDbSource, onEmptyUniqueIdentifiers, onMissingExpansionId, onMissingInteractorIdentifierColumns, onSeveralCreatedDateFound, onSeveralCvTermsFound, onSeveralFirstAuthorFound, onSeveralHostOrganismFound, onSeveralOrganismFound, onSeveralSourceFound, onSeveralStoichiometryFound, onSeveralUniqueIdentifiers, onSeveralUpdatedDateFound, onTextFoundInConfidence, onTextFoundInIdentifier
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