Package psidev.psi.mi.jami.tab.io.writer

Class Mitab26ModelledWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<ModelledInteraction,ModelledBinaryInteraction,ModelledParticipant>

psidev.psi.mi.jami.tab.io.writer.Mitab25ModelledWriter

psidev.psi.mi.jami.tab.io.writer.Mitab26ModelledWriter

All Implemented Interfaces:

InteractionWriter<ModelledInteraction>

Direct Known Subclasses:

Mitab27ModelledWriter

public class Mitab26ModelledWriter
extends Mitab25ModelledWriter

Mitab 2.6 writer for Modelled interaction

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab26ModelledWriter()	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(File file)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(OutputStream output)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(Writer writer)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseFile(File file)	initialiseFile.
protected void	initialiseOutputStream(OutputStream output)	initialiseOutputStream.
protected void	initialiseWriter(Writer writer)	initialiseWriter.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.Mitab25ModelledWriter

initialiseExpansionMethod

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

close, end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, reset, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab26ModelledWriter

public Mitab26ModelledWriter()

Constructor for Mitab26ModelledWriter.

Mitab26ModelledWriter

public Mitab26ModelledWriter(File file)
                      throws IOException

Constructor for Mitab26ModelledWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab26ModelledWriter

public Mitab26ModelledWriter(OutputStream output)

Constructor for Mitab26ModelledWriter.

Parameters:

output - a OutputStream object.

Mitab26ModelledWriter

public Mitab26ModelledWriter(Writer writer)

Constructor for Mitab26ModelledWriter.

Parameters:

writer - a Writer object.

Mitab26ModelledWriter

public Mitab26ModelledWriter(File file,
                             ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)
                      throws IOException

Constructor for Mitab26ModelledWriter.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab26ModelledWriter

public Mitab26ModelledWriter(OutputStream output,
                             ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)

Constructor for Mitab26ModelledWriter.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Mitab26ModelledWriter

public Mitab26ModelledWriter(Writer writer,
                             ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)

Constructor for Mitab26ModelledWriter.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Overrides:

getVersion in class Mitab25ModelledWriter

Returns:

a MitabVersion object.

initialiseWriter

protected void initialiseWriter(Writer writer)

initialiseWriter.

Overrides:

initialiseWriter in class Mitab25ModelledWriter

Parameters:

writer - a Writer object.

initialiseOutputStream

protected void initialiseOutputStream(OutputStream output)

initialiseOutputStream.

Overrides:

initialiseOutputStream in class Mitab25ModelledWriter

Parameters:

output - a OutputStream object.

initialiseFile

protected void initialiseFile(File file)
                       throws IOException

initialiseFile.

Overrides:

initialiseFile in class Mitab25ModelledWriter

Parameters:

file - a File object.

Throws:

IOException - if any.