Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab25EvidenceWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25EvidenceWriter

All Implemented Interfaces:

InteractionWriter<InteractionEvidence>

Direct Known Subclasses:

Mitab26EvidenceWriter

public class Mitab25EvidenceWriter
extends AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

The mitab 2.5 writer for interaction evidence

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab25EvidenceWriter()	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(File file)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(OutputStream output)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(Writer writer)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseExpansionMethod(ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	initialiseExpansionMethod.
protected void	initialiseFile(File file)	initialiseFile.
protected void	initialiseOutputStream(OutputStream output)	initialiseOutputStream.
protected void	initialiseWriter(Writer writer)	initialiseWriter.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

close, end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, reset, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab25EvidenceWriter

public Mitab25EvidenceWriter()

Constructor for Mitab25EvidenceWriter.

Mitab25EvidenceWriter

public Mitab25EvidenceWriter(File file)
                      throws IOException

Constructor for Mitab25EvidenceWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab25EvidenceWriter

public Mitab25EvidenceWriter(OutputStream output)

Constructor for Mitab25EvidenceWriter.

Parameters:

output - a OutputStream object.

Mitab25EvidenceWriter

public Mitab25EvidenceWriter(Writer writer)

Constructor for Mitab25EvidenceWriter.

Parameters:

writer - a Writer object.

Mitab25EvidenceWriter

public Mitab25EvidenceWriter(OutputStream output,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab25EvidenceWriter.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Mitab25EvidenceWriter

public Mitab25EvidenceWriter(File file,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)
                      throws IOException

Constructor for Mitab25EvidenceWriter.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab25EvidenceWriter

public Mitab25EvidenceWriter(Writer writer,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab25EvidenceWriter.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Specified by:

getVersion in class AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

Returns:

a MitabVersion object.

initialiseExpansionMethod

protected void initialiseExpansionMethod(ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

initialiseExpansionMethod.

Specified by:

initialiseExpansionMethod in class AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

Parameters:

expansionMethod - a ComplexExpansionMethod object.

initialiseWriter

protected void initialiseWriter(Writer writer)

initialiseWriter.

Specified by:

initialiseWriter in class AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

Parameters:

writer - a Writer object.

initialiseOutputStream

protected void initialiseOutputStream(OutputStream output)

initialiseOutputStream.

Specified by:

initialiseOutputStream in class AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

Parameters:

output - a OutputStream object.

initialiseFile

protected void initialiseFile(File file)
                       throws IOException

initialiseFile.

Specified by:

initialiseFile in class AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

Parameters:

file - a File object.

Throws:

IOException - if any.