Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab26EvidenceWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<InteractionEvidence,BinaryInteractionEvidence,ParticipantEvidence>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25EvidenceWriter

psidev.psi.mi.jami.tab.io.writer.extended.Mitab26EvidenceWriter

All Implemented Interfaces:

InteractionWriter<InteractionEvidence>

Direct Known Subclasses:

Mitab27EvidenceWriter

public class Mitab26EvidenceWriter
extends Mitab25EvidenceWriter

Mitab 2.6 writer for interaction evidence

Since:

20/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab26EvidenceWriter()	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(File file)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(OutputStream output)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(Writer writer)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseFile(File file)	initialiseFile.
protected void	initialiseOutputStream(OutputStream output)	initialiseOutputStream.
protected void	initialiseWriter(Writer writer)	initialiseWriter.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.extended.Mitab25EvidenceWriter

initialiseExpansionMethod

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

close, end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, reset, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab26EvidenceWriter

public Mitab26EvidenceWriter()

Constructor for Mitab26EvidenceWriter.

Mitab26EvidenceWriter

public Mitab26EvidenceWriter(File file)
                      throws IOException

Constructor for Mitab26EvidenceWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab26EvidenceWriter

public Mitab26EvidenceWriter(OutputStream output)

Constructor for Mitab26EvidenceWriter.

Parameters:

output - a OutputStream object.

Mitab26EvidenceWriter

public Mitab26EvidenceWriter(Writer writer)

Constructor for Mitab26EvidenceWriter.

Parameters:

writer - a Writer object.

Mitab26EvidenceWriter

public Mitab26EvidenceWriter(OutputStream output,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab26EvidenceWriter.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Mitab26EvidenceWriter

public Mitab26EvidenceWriter(File file,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)
                      throws IOException

Constructor for Mitab26EvidenceWriter.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab26EvidenceWriter

public Mitab26EvidenceWriter(Writer writer,
                             ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)

Constructor for Mitab26EvidenceWriter.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Overrides:

getVersion in class Mitab25EvidenceWriter

Returns:

a MitabVersion object.

initialiseWriter

protected void initialiseWriter(Writer writer)

initialiseWriter.

Overrides:

initialiseWriter in class Mitab25EvidenceWriter

Parameters:

writer - a Writer object.

initialiseOutputStream

protected void initialiseOutputStream(OutputStream output)

initialiseOutputStream.

Overrides:

initialiseOutputStream in class Mitab25EvidenceWriter

Parameters:

output - a OutputStream object.

initialiseFile

protected void initialiseFile(File file)
                       throws IOException

initialiseFile.

Overrides:

initialiseFile in class Mitab25EvidenceWriter

Parameters:

file - a File object.

Throws:

IOException - if any.