Package psidev.psi.mi.jami.tab.io.writer.extended

Class Mitab28Writer

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter<Interaction,BinaryInteraction,Participant>

psidev.psi.mi.jami.tab.io.writer.extended.Mitab25Writer

psidev.psi.mi.jami.tab.io.writer.extended.Mitab26Writer

psidev.psi.mi.jami.tab.io.writer.extended.Mitab27Writer

psidev.psi.mi.jami.tab.io.writer.extended.Mitab28Writer

All Implemented Interfaces:

InteractionWriter<Interaction>

public class Mitab28Writer
extends Mitab27Writer

The simple MITAB 2.8 writer will write interactions using the JAMI interfaces. It will not check for MITAB extended objects (such as MitabAlias and DefaultMitabFeature). The default Complex expansion method is spoke expansion.

Since:

13/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
Mitab28Writer()	Constructor for Mitab28Writer.
Mitab28Writer(File file)	Constructor for Mitab28Writer.
Mitab28Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.
Mitab28Writer(OutputStream output)	Constructor for Mitab28Writer.
Mitab28Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.
Mitab28Writer(Writer writer)	Constructor for Mitab28Writer.
Mitab28Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.

Method Summary

Modifier and Type	Method	Description
MitabVersion	getVersion()	getVersion.
protected void	initialiseSubWriters()	initialiseSubWriters.

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.extended.Mitab25Writer

close, getWriter, initialiseExpansionMethod, initialiseFile, initialiseOutputStream, initialiseWriter, reset, setInteractionEvidenceWriter, setModelledInteractionWriter, start, write

Methods inherited from class psidev.psi.mi.jami.tab.io.writer.AbstractMitabWriter

end, flush, getBinaryWriter, getExpansionMethod, hasStarted, initialiseContext, isWriteHeader, setBinaryWriter, setExpansionMethod, setStarted, setWriteHeader, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Mitab28Writer

public Mitab28Writer()

Constructor for Mitab28Writer.

Mitab28Writer

public Mitab28Writer(File file)
              throws IOException

Constructor for Mitab28Writer.

Parameters:

file - a File object.

Throws:

IOException - if any.

Mitab28Writer

public Mitab28Writer(OutputStream output)

Constructor for Mitab28Writer.

Parameters:

output - a OutputStream object.

Mitab28Writer

public Mitab28Writer(Writer writer)

Constructor for Mitab28Writer.

Parameters:

writer - a Writer object.

Mitab28Writer

public Mitab28Writer(File file,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab28Writer.

Parameters:

file - a File object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab28Writer

public Mitab28Writer(OutputStream output,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab28Writer.

Parameters:

output - a OutputStream object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Mitab28Writer

public Mitab28Writer(Writer writer,
                     ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
              throws IOException

Constructor for Mitab28Writer.

Parameters:

writer - a Writer object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

Method Detail

getVersion

public MitabVersion getVersion()

getVersion.

Overrides:

getVersion in class Mitab27Writer

Returns:

a MitabVersion object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Overrides:

initialiseSubWriters in class Mitab27Writer