Package psidev.psi.mi.jami.utils.clone

Class InteractorCloner

java.lang.Object

psidev.psi.mi.jami.utils.clone.InteractorCloner

public class InteractorCloner
extends Object

Cloner for interactors

Since:

13/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
InteractorCloner()

Method Summary

Modifier and Type	Method	Description
static void	copyAndOverrideBasicComplexPropertiesWithInteractionProperties(Interaction source, Complex target)	This method will copy basic properties from the Interaction source in the complex target.
static void	copyAndOverrideBasicComplexPropertiesWithModelledInteractionProperties(ModelledInteraction source, Complex target)	This method will copy basic properties from the Interaction source in the complex target.
static void	copyAndOverrideBasicInteractorPoolProperties(InteractorPool source, InteractorPool target)	copyAndOverrideBasicInteractorPoolProperties
static void	copyAndOverrideBasicInteractorProperties(Interactor source, Interactor target)	This method will copy properties of interactor source in interactor target and will override all the other properties of Target interactor.
static void	copyAndOverrideBasicPolymerProperties(Polymer source, Polymer target)	copyAndOverrideBasicPolymerProperties
static void	copyAndOverrideComplexProperties(Complex source, Complex target, boolean createNewParticipant, boolean ignoreParticipants)	This method will copy properties of complex source in complex target and will override all the other properties of Target complex.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InteractorCloner

public InteractorCloner()

Method Detail

copyAndOverrideBasicInteractorProperties

public static void copyAndOverrideBasicInteractorProperties(Interactor source,
                                                            Interactor target)

This method will copy properties of interactor source in interactor target and will override all the other properties of Target interactor.

Parameters:

source - a Interactor object.

target - a Interactor object.

copyAndOverrideBasicPolymerProperties

public static void copyAndOverrideBasicPolymerProperties(Polymer source,
                                                         Polymer target)

copyAndOverrideBasicPolymerProperties

Parameters:

source - a Polymer object.

target - a Polymer object.

copyAndOverrideBasicInteractorPoolProperties

public static void copyAndOverrideBasicInteractorPoolProperties(InteractorPool source,
                                                                InteractorPool target)

copyAndOverrideBasicInteractorPoolProperties

Parameters:

source - a InteractorPool object.

target - a InteractorPool object.

copyAndOverrideComplexProperties

public static void copyAndOverrideComplexProperties(Complex source,
                                                    Complex target,
                                                    boolean createNewParticipant,
                                                    boolean ignoreParticipants)

This method will copy properties of complex source in complex target and will override all the other properties of Target complex. This method does not copy the

Parameters:

source - a Complex object.

target - a Complex object.

createNewParticipant - If true, this method will clone each participant from source instead of reusing the participant instances from source. It will then set the interactionEvidence of the cloned participants to target

ignoreParticipants - If true, this method will clone the interaction properties and ignore the participants of the source

copyAndOverrideBasicComplexPropertiesWithInteractionProperties

public static void copyAndOverrideBasicComplexPropertiesWithInteractionProperties(Interaction source,
                                                                                  Complex target)

This method will copy basic properties from the Interaction source in the complex target. It will erase existing annotations, xrefs, checksums and identifiers This method does not copy the participants of the source

Parameters:

source - a Interaction object.

target - a Complex object.

copyAndOverrideBasicComplexPropertiesWithModelledInteractionProperties

public static void copyAndOverrideBasicComplexPropertiesWithModelledInteractionProperties(ModelledInteraction source,
                                                                                          Complex target)

This method will copy basic properties from the Interaction source in the complex target. This method does not copy the participants of the source

Parameters:

source - a ModelledInteraction object.

target - a Complex object.