Polymer (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

All Superinterfaces:

Interactor, Molecule

All Known Subinterfaces:

NucleicAcid, Protein

All Known Implementing Classes:

CsvProtein, DefaultNucleicAcid, DefaultPolymer, DefaultProtein, MitabNucleicAcid, MitabPolymer, MitabProtein, XmlNucleicAcid, XmlNucleicAcid, XmlNucleicAcid, XmlPolymer, XmlPolymer, XmlPolymer, XmlProtein, XmlProtein, XmlProtein
```
public interface Polymer
extends Molecule
```
A polymer is an interactor with a sequence
Since:
```
21/03/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields
Modifier and Type Field Description

static String POLYMER
Constant POLYMER="biopolymer"

static String POLYMER_MI
Constant POLYMER_MI="MI:0383"
- Fields inherited from interface psidev.psi.mi.jami.model.Interactor
  UNKNOWN_INTERACTOR, UNKNOWN_INTERACTOR_MI

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`String`	`getSequence()`	The sequence of the polymer.
`void`	`setSequence(String sequence)`	Sets the sequence of the polymer.

Methods inherited from interface psidev.psi.mi.jami.model.Interactor
getAliases, getAnnotations, getChecksums, getFullName, getIdentifiers, getInteractorType, getOrganism, getPreferredIdentifier, getPreferredName, getShortName, getXrefs, setFullName, setInteractorType, setOrganism, setShortName

- Field Detail
  - POLYMER
```
static final String POLYMER
```
    Constant POLYMER="biopolymer"
    
    See Also:
    
    Constant Field Values
  - POLYMER_MI
```
static final String POLYMER_MI
```
    Constant POLYMER_MI="MI:0383"
    
    See Also:
    
    Constant Field Values
- Method Detail
  - getSequence
```
String getSequence()
```
    The sequence of the polymer. Null if it is not known
    
    Returns:
    
    the sequence
  - setSequence
```
void setSequence(String sequence)
```
    Sets the sequence of the polymer.
    
    Parameters:
    
    sequence - : sequence to set