Package psidev.psi.mi.jami.utils.comparator.cooperativity

Class AllosteryComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.cooperativity.AllosteryComparator

All Implemented Interfaces:

Comparator<Allostery>

Direct Known Subclasses:

UnambiguousAllosteryComparator, UnambiguousExactAllosteryComparator

public class AllosteryComparator
extends Object
implements Comparator<Allostery>

Basic comparator for Allostery It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator. Then, it will compare the allosteric effector types : - molecule effector types always come first - if both allosteric effector are molecule effectors, it will use MoleculeEffectorComparator to compare them - if both allosteric effector are feature modification effectors, it will use FeatureModificationEffectorComparator to compare them Then, it will compare the allosteric mechanisms using AbstractCvTermComparator Then, it will compare the allostery type using AbstractCvTermComparator Finally, it will compare the allosteric molecule using ModelledParticipantComparator

Since:

31/05/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
AllosteryComparator(CooperativeEffectBaseComparator cooperativeEffectComparator, MoleculeEffectorComparator moleculeEffectorComparator, FeatureModificationEffectorComparator featureModificationEffectorComparator)	Constructor for AllosteryComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(Allostery allostery1, Allostery allostery2)	It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator.
CooperativeEffectBaseComparator	getCooperativeEffectComparator()	Getter for the field cooperativeEffectComparator.
FeatureModificationEffectorComparator	getFeatureModificationEffectorComparator()	Getter for the field featureModificationEffectorComparator.
MoleculeEffectorComparator	getMoleculeEffectorComparator()	Getter for the field moleculeEffectorComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

AllosteryComparator

public AllosteryComparator(CooperativeEffectBaseComparator cooperativeEffectComparator,
                           MoleculeEffectorComparator moleculeEffectorComparator,
                           FeatureModificationEffectorComparator featureModificationEffectorComparator)

Constructor for AllosteryComparator.

Parameters:

cooperativeEffectComparator - a CooperativeEffectBaseComparator object.

moleculeEffectorComparator - a MoleculeEffectorComparator object.

featureModificationEffectorComparator - a FeatureModificationEffectorComparator object.

Method Detail

getCooperativeEffectComparator

public CooperativeEffectBaseComparator getCooperativeEffectComparator()

Getter for the field cooperativeEffectComparator.

Returns:

a CooperativeEffectBaseComparator object.

getMoleculeEffectorComparator

public MoleculeEffectorComparator getMoleculeEffectorComparator()

Getter for the field moleculeEffectorComparator.

Returns:

a MoleculeEffectorComparator object.

getFeatureModificationEffectorComparator

public FeatureModificationEffectorComparator getFeatureModificationEffectorComparator()

Getter for the field featureModificationEffectorComparator.

Returns:

a FeatureModificationEffectorComparator object.

compare

public int compare(Allostery allostery1,
                   Allostery allostery2)

It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator. Then, it will compare the allosteric effector types : - molecule effector types always come first - if both allosteric effector are molecule effectors, it will use MoleculeEffectorComparator to compare them - if both allosteric effector are feature modification effectors, it will use FeatureModificationEffectorComparator to compare them Then, it will compare the allosteric mechanisms using AbstractCvTermComparator Then, it will compare the allostery type using AbstractCvTermComparator Finally, it will compare the allosteric molecule using ModelledParticipantComparator

Specified by:

compare in interface Comparator<Allostery>

Parameters:

allostery1 - : first allostery

allostery2 - : second allostery

Returns:

the comparison value