Package psidev.psi.mi.jami.utils.comparator.cooperativity

Class CooperativeEffectBaseComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.cooperativity.CooperativeEffectBaseComparator

All Implemented Interfaces:

Comparator<CooperativeEffect>

Direct Known Subclasses:

UnambiguousCooperativeEffectBaseComparator, UnambiguousExactCooperativeEffectBaseComparator

public class CooperativeEffectBaseComparator
extends Object
implements Comparator<CooperativeEffect>

Basic comparator for CooperativeEffect It will first compare the outcome using AbstractCvTermComparator. Then it will compare the response using AbstractCvTermComparator. Then it will compare the CooperativityEvidences using CooperativityEvidenceComparator. Finally it will compare the affected interactions using ModelledInteractionComparator

Since:

22/05/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CooperativeEffectBaseComparator(Comparator<CvTerm> cvTermComparator, CollectionComparator<CooperativityEvidence> cooperativityEvidenceComparator, CollectionComparator<ModelledInteraction> modelledInteractionComparator)	Constructor for CooperativeEffectBaseComparator.
CooperativeEffectBaseComparator(Comparator<CvTerm> cvTermComparator, CooperativityEvidenceComparator cooperativityEvidenceComparator, ModelledInteractionComparator modelledInteractionComparator)	Constructor for CooperativeEffectBaseComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(CooperativeEffect cooperativeEffect1, CooperativeEffect cooperativeEffect2)	It will first compare the outcome using AbstractCvTermComparator.
CollectionComparator<CooperativityEvidence>	getCooperativityEvidenceCollectionComparator()	Getter for the field cooperativityEvidenceCollectionComparator.
Comparator<CvTerm>	getCvTermComparator()	Getter for the field cvTermComparator.
CollectionComparator<ModelledInteraction>	getModelledInteractionCollectionComparator()	Getter for the field modelledInteractionCollectionComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

CooperativeEffectBaseComparator

public CooperativeEffectBaseComparator(Comparator<CvTerm> cvTermComparator,
                                       CooperativityEvidenceComparator cooperativityEvidenceComparator,
                                       ModelledInteractionComparator modelledInteractionComparator)

Constructor for CooperativeEffectBaseComparator.

Parameters:

cvTermComparator - a Comparator object.

cooperativityEvidenceComparator - a CooperativityEvidenceComparator object.

modelledInteractionComparator - a ModelledInteractionComparator object.

CooperativeEffectBaseComparator

public CooperativeEffectBaseComparator(Comparator<CvTerm> cvTermComparator,
                                       CollectionComparator<CooperativityEvidence> cooperativityEvidenceComparator,
                                       CollectionComparator<ModelledInteraction> modelledInteractionComparator)

Constructor for CooperativeEffectBaseComparator.

Parameters:

cvTermComparator - a Comparator object.

cooperativityEvidenceComparator - a CollectionComparator object.

modelledInteractionComparator - a CollectionComparator object.

Method Detail

getCvTermComparator

public Comparator<CvTerm> getCvTermComparator()

Getter for the field cvTermComparator.

Returns:

a Comparator object.

getCooperativityEvidenceCollectionComparator

public CollectionComparator<CooperativityEvidence> getCooperativityEvidenceCollectionComparator()

Getter for the field cooperativityEvidenceCollectionComparator.

Returns:

a CollectionComparator object.

getModelledInteractionCollectionComparator

public CollectionComparator<ModelledInteraction> getModelledInteractionCollectionComparator()

Getter for the field modelledInteractionCollectionComparator.

Returns:

a CollectionComparator object.

compare

public int compare(CooperativeEffect cooperativeEffect1,
                   CooperativeEffect cooperativeEffect2)

It will first compare the outcome using AbstractCvTermComparator. Then it will compare the response using AbstractCvTermComparator. Then it will compare the CooperativityEvidences using CooperativityEvidenceComparator. Finally it will compare the affected interactions using ModelledInteractionComparator

Specified by:

compare in interface Comparator<CooperativeEffect>

Parameters:

cooperativeEffect1 - a CooperativeEffect object.

cooperativeEffect2 - a CooperativeEffect object.

Returns:

a int.