Package psidev.psi.mi.jami.utils.comparator.cooperativity

Class UnambiguousExactAllosteryComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.cooperativity.AllosteryComparator

psidev.psi.mi.jami.utils.comparator.cooperativity.UnambiguousExactAllosteryComparator

All Implemented Interfaces:

Comparator<Allostery>

public class UnambiguousExactAllosteryComparator
extends AllosteryComparator

Unambiguous exact comparator for Allostery It will first compare basic cooperative effect properties using UnambiguousExactCooperativeEffectBaseComparator. Then, it will compare the allosteric effector types : - molecule effector types always come first - if both allosteric effector are molecule effectors, it will use UnambiguousExactMoleculeEffectorComparator to compare them - if both allosteric effector are feature modification effectors, it will use UnambiguousFeatureModificationEffectorComparator to compare them Then, it will compare the allosteric mechanisms using UnambiguousCvTermComparator Then, it will compare the allostery type using UnambiguousCvTermComparator Finally, it will compare the allosteric molecule using UnambiguousExactModelledParticipantComparator

Since:

31/05/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousExactAllosteryComparator()	Constructor for UnambiguousExactAllosteryComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Allostery effect1, Allostery effect2)	Use UnambiguousExactAllosteryComparator to know if two allostery are equals.
int	compare(Allostery effect1, Allostery effect2)	It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator.
UnambiguousExactCooperativeEffectBaseComparator	getCooperativeEffectComparator()	Getter for the field cooperativeEffectComparator.
UnambiguousFeatureModificationEffectorComparator	getFeatureModificationEffectorComparator()	Getter for the field featureModificationEffectorComparator.
UnambiguousExactMoleculeEffectorComparator	getMoleculeEffectorComparator()	Getter for the field moleculeEffectorComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousExactAllosteryComparator

public UnambiguousExactAllosteryComparator()

Constructor for UnambiguousExactAllosteryComparator.

Method Detail

getCooperativeEffectComparator

public UnambiguousExactCooperativeEffectBaseComparator getCooperativeEffectComparator()

Getter for the field cooperativeEffectComparator.

Overrides:

getCooperativeEffectComparator in class AllosteryComparator

Returns:

a CooperativeEffectBaseComparator object.

getMoleculeEffectorComparator

public UnambiguousExactMoleculeEffectorComparator getMoleculeEffectorComparator()

Getter for the field moleculeEffectorComparator.

Overrides:

getMoleculeEffectorComparator in class AllosteryComparator

Returns:

a MoleculeEffectorComparator object.

getFeatureModificationEffectorComparator

public UnambiguousFeatureModificationEffectorComparator getFeatureModificationEffectorComparator()

Getter for the field featureModificationEffectorComparator.

Overrides:

getFeatureModificationEffectorComparator in class AllosteryComparator

Returns:

a FeatureModificationEffectorComparator object.

compare

public int compare(Allostery effect1,
                   Allostery effect2)

It will first compare basic cooperative effect properties using CooperativeEffectBaseComparator. Then, it will compare the allosteric effector types : - molecule effector types always come first - if both allosteric effector are molecule effectors, it will use MoleculeEffectorComparator to compare them - if both allosteric effector are feature modification effectors, it will use FeatureModificationEffectorComparator to compare them Then, it will compare the allosteric mechanisms using AbstractCvTermComparator Then, it will compare the allostery type using AbstractCvTermComparator Finally, it will compare the allosteric molecule using ModelledParticipantComparator It will first compare basic cooperative effect properties using UnambiguousExactCooperativeEffectBaseComparator. Then, it will compare the allosteric effector types : - molecule effector types always come first - if both allosteric effector are molecule effectors, it will use UnambiguousExactMoleculeEffectorComparator to compare them - if both allosteric effector are feature modification effectors, it will use UnambiguousFeatureModificationEffectorComparator to compare them Then, it will compare the allosteric mechanisms using UnambiguousCvTermComparator Then, it will compare the allostery type using UnambiguousCvTermComparator Finally, it will compare the allosteric molecule using UnambiguousExactModelledParticipantComparator

Specified by:

compare in interface Comparator<Allostery>

Overrides:

compare in class AllosteryComparator

Parameters:

effect1 - : first allostery

effect2 - : second allostery

Returns:

the comparison value

areEquals

public static boolean areEquals(Allostery effect1,
                                Allostery effect2)

Use UnambiguousExactAllosteryComparator to know if two allostery are equals.

Parameters:

effect1 - a Allostery object.

effect2 - a Allostery object.

Returns:

true if the two Allostery are equal