Package psidev.psi.mi.jami.utils.comparator.feature

Class UnambiguousFeatureEvidenceComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.feature.FeatureEvidenceComparator

psidev.psi.mi.jami.utils.comparator.feature.UnambiguousFeatureEvidenceComparator

All Implemented Interfaces:

Comparator<FeatureEvidence>

public class UnambiguousFeatureEvidenceComparator
extends FeatureEvidenceComparator

Unambiguous FeatureEvidence comparator. It will first compare feature detection methods using UnambiguousCvTermComparator. If both feature detection methods are the same, it will use a UnambiguousFeatureBaseComparator to compare basic properties of a feature. This comparator will ignore all the other properties of an experimental feature.

Since:

16/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
protected ParameterCollectionComparator	parameterCollectionComparator

Constructor Summary

Constructors

Constructor	Description
UnambiguousFeatureEvidenceComparator()	Creates a new UnambiguousFeatureEvidenceComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(FeatureEvidence feature1, FeatureEvidence feature2)	Use UnambiguousFeatureEvidenceComparator to know if two experimental features are equals.
int	compare(FeatureEvidence experimentalFeature1, FeatureEvidence experimentalFeature2)	It will first compare feature detection methods using UnambiguousCvTermComparator.
UnambiguousFeatureBaseComparator	getFeatureComparator()	Getter for the field featureComparator.
ParameterCollectionComparator	getParameterCollectionComparator()

Methods inherited from class psidev.psi.mi.jami.utils.comparator.feature.FeatureEvidenceComparator

getCvTermCollectionComparators

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Field Detail

parameterCollectionComparator

protected ParameterCollectionComparator parameterCollectionComparator

Constructor Detail

UnambiguousFeatureEvidenceComparator

public UnambiguousFeatureEvidenceComparator()

Creates a new UnambiguousFeatureEvidenceComparator. It will use a UnambiguousCvTermComparator to compare feature detection methods and a UnambiguousFeatureBaseComparator to compare basic feature properties

Method Detail

getFeatureComparator

public UnambiguousFeatureBaseComparator getFeatureComparator()

Getter for the field featureComparator.

Overrides:

getFeatureComparator in class FeatureEvidenceComparator

Returns:

a Comparator object.

getParameterCollectionComparator

public ParameterCollectionComparator getParameterCollectionComparator()

compare

public int compare(FeatureEvidence experimentalFeature1,
                   FeatureEvidence experimentalFeature2)

It will first compare feature detection methods using UnambiguousCvTermComparator. If both feature detection methods are the same, it will use a UnambiguousFeatureBaseComparator to compare basic properties of a feature. This comparator will ignore all the other properties of an experimental feature.

Specified by:

compare in interface Comparator<FeatureEvidence>

Overrides:

compare in class FeatureEvidenceComparator

Parameters:

experimentalFeature1 - a FeatureEvidence object.

experimentalFeature2 - a FeatureEvidence object.

Returns:

a int.

areEquals

public static boolean areEquals(FeatureEvidence feature1,
                                FeatureEvidence feature2)

Use UnambiguousFeatureEvidenceComparator to know if two experimental features are equals.

Parameters:

feature1 - a FeatureEvidence object.

feature2 - a FeatureEvidence object.

Returns:

true if the two experimental features are equal