PolymerComparator (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.utils.comparator.interactor.PolymerComparator

All Implemented Interfaces:

Comparator<Polymer>

Direct Known Subclasses:

UnambiguousExactPolymerComparator, UnambiguousPolymerComparator
```
public class PolymerComparator
extends Object
implements Comparator<Polymer>
```
polymer comparator. It will first use UnambiguousInteractorBaseComparator to compare the basic interactor properties If the basic interactor properties are the same, it will look at sequence/organism. *
Since:
```
21/05/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor	Description
`PolymerComparator(Comparator<Interactor> interactorBaseComparator, OrganismTaxIdComparator organismComparator)`	Creates a new UnambiguousPolymerComparator.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`compare(Polymer polymer1, Polymer polymer2)`	It will first use DefaultExactInteractorBaseComparator to compare the basic interactor properties If the basic interactor properties are the same, it will look at sequence/organism.
`Comparator<Interactor>`	`getInteractorComparator()`	Getter for the field `interactorComparator`.
`OrganismTaxIdComparator`	`getOrganismComparator()`	Getter for the field `organismComparator`.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator
equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

- Constructor Detail
  - PolymerComparator
```
public PolymerComparator(Comparator<Interactor> interactorBaseComparator,
                         OrganismTaxIdComparator organismComparator)
```
    Creates a new UnambiguousPolymerComparator. It will uses a UnambiguousInteractorBaseComparator to compare interactor properties and a OrganismTaxIdComparator to compares organism.
    
    Parameters:
    
    interactorBaseComparator - a Comparator object.
    
    organismComparator - a OrganismTaxIdComparator object.
- Method Detail
  - getInteractorComparator
```
public Comparator<Interactor> getInteractorComparator()
```
    Getter for the field interactorComparator.
    
    Returns:
    
    a Comparator object.
  - getOrganismComparator
```
public OrganismTaxIdComparator getOrganismComparator()
```
    Getter for the field organismComparator.
    
    Returns:
    
    a OrganismTaxIdComparator object.
  - compare
```
public int compare(Polymer polymer1,
                   Polymer polymer2)
```
    It will first use DefaultExactInteractorBaseComparator to compare the basic interactor properties If the basic interactor properties are the same, it will look at sequence/organism.
    
    Specified by:
    
    compare in interface Comparator<Polymer>
    
    Parameters:
    
    polymer1 - a Polymer object.
    
    polymer2 - a Polymer object.
    
    Returns:
    
    a int.