Package psidev.psi.mi.jami.utils.comparator.interactor

Class UnambiguousExactPolymerComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interactor.PolymerComparator

psidev.psi.mi.jami.utils.comparator.interactor.UnambiguousExactPolymerComparator

All Implemented Interfaces:

Comparator<Polymer>

public class UnambiguousExactPolymerComparator
extends PolymerComparator

Unambiguous exact polymer comparator. It will first use UnambiguousExactInteractorBaseComparator to compare the basic interactor properties If the basic interactor properties are the same, it will look at sequence/organism.

Since:

21/05/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousExactPolymerComparator()	Creates a new UnambiguousExactPolymerComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Polymer polymer1, Polymer polymer2)	Use UnambiguousPolymerComparator to know if two polymers are equals.
int	compare(Polymer polymer1, Polymer polymer2)	It will first use DefaultExactInteractorBaseComparator to compare the basic interactor properties If the basic interactor properties are the same, it will look at sequence/organism.
UnambiguousExactInteractorBaseComparator	getInteractorComparator()	Getter for the field interactorComparator.

Methods inherited from class psidev.psi.mi.jami.utils.comparator.interactor.PolymerComparator

getOrganismComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousExactPolymerComparator

public UnambiguousExactPolymerComparator()

Creates a new UnambiguousExactPolymerComparator. It will uses a UnambiguousExactInteractorBaseComparator to compare interactor properties and a OrganismTaxIdComparator to compares organism.

Method Detail

compare

public int compare(Polymer polymer1,
                   Polymer polymer2)

Description copied from class: PolymerComparator

It will first use DefaultExactInteractorBaseComparator to compare the basic interactor properties If the basic interactor properties are the same, it will look at sequence/organism.

Specified by:

compare in interface Comparator<Polymer>

Overrides:

compare in class PolymerComparator

Parameters:

polymer1 - a Polymer object.

polymer2 - a Polymer object.

Returns:

a int.

getInteractorComparator

public UnambiguousExactInteractorBaseComparator getInteractorComparator()

Getter for the field interactorComparator.

Overrides:

getInteractorComparator in class PolymerComparator

Returns:

a Comparator object.

areEquals

public static boolean areEquals(Polymer polymer1,
                                Polymer polymer2)

Use UnambiguousPolymerComparator to know if two polymers are equals.

Parameters:

polymer1 - a Polymer object.

polymer2 - a Polymer object.

Returns:

true if the two polymers are equal