Package psidev.psi.mi.jami.utils.comparator.interactor

Class UnambiguousExactInteractorComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interactor.InteractorComparator

psidev.psi.mi.jami.utils.comparator.interactor.UnambiguousExactInteractorComparator

All Implemented Interfaces:

Comparator<Interactor>

public class UnambiguousExactInteractorComparator
extends InteractorComparator

Unambiguous exact Interactor Comparator.

Bioactive entities come first, then proteins, then genes, then nucleic acids, then complexes and finally InteractorPool. If two interactors are from the same Interactor interface, it will use a more specific Comparator : - Uses UnambiguousExactBioactiveEntityComparator for comparing BioactiveEntity objects. - Uses UnambiguousExactProteinComparator for comparing Protein objects. - Uses UnambiguousExactGeneComparator for comparing Gene objects. - Uses UnambiguousExactNucleicAcidComparator for comparing NucleicAcids objects. - Uses UnambiguousExactPolymerComparator for comparing Polymer objects - Uses UnambiguousExactComplexComparator for comparing complexes - Uses UnambiguousExactInteractorPoolComparator for comparing interactor candidates - use UnambiguousExactInteractorBaseComparator for comparing basic interactors that are not one of the above..

Since:

17/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousExactInteractorComparator()
UnambiguousExactInteractorComparator(UnambiguousExactComplexComparator comparator)	Constructor for UnambiguousExactInteractorComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Interactor interactor1, Interactor interactor2)	Use UnambiguousExactInteractorComparator to know if two interactors are equals.
int	compare(Interactor interactor1, Interactor interactor2)	Bioactive entities come first, then proteins, then genes, then nucleic acids, then complexes and finally InteractorPool.
UnambiguousExactBioactiveEntityComparator	getBioactiveEntityComparator()	Getter for the field bioactiveEntityComparator.
UnambiguousExactComplexComparator	getComplexComparator()	Getter for the field complexComparator.
UnambiguousExactGeneComparator	getGeneComparator()	Getter for the field geneComparator.
UnambiguousExactInteractorBaseComparator	getInteractorBaseComparator()	Getter for the field interactorBaseComparator.
UnambiguousExactNucleicAcidComparator	getNucleicAcidComparator()	Getter for the field nucleicAcidComparator.
UnambiguousExactPolymerComparator	getPolymerComparator()	Getter for the field polymerComparator.
UnambiguousExactProteinComparator	getProteinComparator()	Getter for the field proteinComparator.

Methods inherited from class psidev.psi.mi.jami.utils.comparator.interactor.InteractorComparator

getInteractorCandidatesComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousExactInteractorComparator

public UnambiguousExactInteractorComparator()

Creates a new UnambiguousExactInteractorComparator. - Uses UnambiguousExactBioactiveEntityComparator for comparing BioactiveEntity objects. - Uses UnambiguousExactProteinComparator for comparing Protein objects. - Uses UnambiguousExactGeneComparator for comparing Gene objects. - Uses UnambiguousExactNucleicAcidComparator for comparing NucleicAcids objects. - Uses UnambiguousExactPolymerComparator for comparing Polymer objects - Uses UnambiguousExactComplexComparator for comparing complexes - Uses UnambiguousExactInteractorPoolComparator for comparing interactor candidates - use UnambiguousExactInteractorBaseComparator for comparing basic interactors that are not one of the above..

UnambiguousExactInteractorComparator

public UnambiguousExactInteractorComparator(UnambiguousExactComplexComparator comparator)

Constructor for UnambiguousExactInteractorComparator.

Parameters:

comparator - a UnambiguousExactComplexComparator object.

Method Detail

areEquals

public static boolean areEquals(Interactor interactor1,
                                Interactor interactor2)

Use UnambiguousExactInteractorComparator to know if two interactors are equals.

Parameters:

interactor1 - a Interactor object.

interactor2 - a Interactor object.

Returns:

true if the two interactors are equal

getInteractorBaseComparator

public UnambiguousExactInteractorBaseComparator getInteractorBaseComparator()

Getter for the field interactorBaseComparator.

Overrides:

getInteractorBaseComparator in class InteractorComparator

Returns:

a Comparator object.

getComplexComparator

public UnambiguousExactComplexComparator getComplexComparator()

Getter for the field complexComparator.

Overrides:

getComplexComparator in class InteractorComparator

Returns:

a Comparator object.

getPolymerComparator

public UnambiguousExactPolymerComparator getPolymerComparator()

Getter for the field polymerComparator.

Overrides:

getPolymerComparator in class InteractorComparator

Returns:

a Comparator object.

getBioactiveEntityComparator

public UnambiguousExactBioactiveEntityComparator getBioactiveEntityComparator()

Getter for the field bioactiveEntityComparator.

Overrides:

getBioactiveEntityComparator in class InteractorComparator

Returns:

a Comparator object.

getGeneComparator

public UnambiguousExactGeneComparator getGeneComparator()

Getter for the field geneComparator.

Overrides:

getGeneComparator in class InteractorComparator

Returns:

a Comparator object.

getNucleicAcidComparator

public UnambiguousExactNucleicAcidComparator getNucleicAcidComparator()

Getter for the field nucleicAcidComparator.

Overrides:

getNucleicAcidComparator in class InteractorComparator

Returns:

a Comparator object.

getProteinComparator

public UnambiguousExactProteinComparator getProteinComparator()

Getter for the field proteinComparator.

Overrides:

getProteinComparator in class InteractorComparator

Returns:

a Comparator object.

compare

public int compare(Interactor interactor1,
                   Interactor interactor2)

Description copied from class: InteractorComparator

Bioactive entities come first, then proteins, then genes, then nucleic acids, then complexes and finally InteractorPool. If two interactors are from the same Interactor interface, it will use a more specific Comparator : - Uses AbstractBioactiveEntityComparator for comparing BioactiveEntity objects. - Uses AbstractProteinComparator for comparing Protein objects. - Uses AbstractGeneComparator for comparing Gene objects. - Uses AbstractNucleicAcidComparator for comparing NucleicAcids objects. - Uses InteractorPoolComparator for comparing interactor candidates - Uses polymerComparator for comparing Polymer objects. - use AbstractInteractorBaseComparator for comparing basic interactors that are not one of the above.

Specified by:

compare in interface Comparator<Interactor>

Overrides:

compare in class InteractorComparator

Parameters:

interactor1 - a Interactor object.

interactor2 - a Interactor object.

Returns:

a int.