Package psidev.psi.mi.jami.utils.comparator.participant

Class ModelledEntityComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.ModelledEntityComparator

All Implemented Interfaces:

Comparator<ModelledEntity>, CustomizableModelledParticipantComparator<ModelledEntity>

Direct Known Subclasses:

UnambiguousExactModelledEntityComparator, UnambiguousModelledEntityComparator

public class ModelledEntityComparator
extends Object
implements CustomizableModelledParticipantComparator<ModelledEntity>

Basic biological entity comparator. It will compare the basic properties of a biological entity using EntityBaseComparator and modelledFeatureComparator. This comparator will ignore all the other properties of a biological participant.

Since:

13/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ModelledEntityComparator(EntityBaseComparator participantBaseComparator, CollectionComparator<ModelledFeature> featureComparator)	Creates a new ComponentComparator
ModelledEntityComparator(EntityBaseComparator participantBaseComparator, ModelledFeatureComparator featureComparator)	Creates a new ComponentComparator

Method Summary

Modifier and Type	Method	Description
void	clearProcessedComplexes()	clearProcessedComplexes
int	compare(ModelledEntity bioParticipant1, ModelledEntity bioParticipant2)	It will compare the basic properties of a biological participant using ParticipantInteractorComparator.
EntityBaseComparator	getEntityBaseComparator()	getEntityBaseComparator
CollectionComparator<ModelledFeature>	getFeatureCollectionComparator()	Getter for the field featureCollectionComparator.
boolean	isCheckComplexesAsInteractors()	isCheckComplexesAsInteractors
void	setCheckComplexesAsInteractors(boolean checkComplexesAsInteractors)	setCheckComplexesAsInteractors

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

ModelledEntityComparator

public ModelledEntityComparator(EntityBaseComparator participantBaseComparator,
                                ModelledFeatureComparator featureComparator)

Creates a new ComponentComparator

Parameters:

participantBaseComparator - a EntityBaseComparator object.

featureComparator - a ModelledFeatureComparator object.

ModelledEntityComparator

public ModelledEntityComparator(EntityBaseComparator participantBaseComparator,
                                CollectionComparator<ModelledFeature> featureComparator)

Creates a new ComponentComparator

Parameters:

participantBaseComparator - a EntityBaseComparator object.

featureComparator - a CollectionComparator object.

Method Detail

getEntityBaseComparator

public EntityBaseComparator getEntityBaseComparator()

getEntityBaseComparator

Returns:

a EntityBaseComparator object.

getFeatureCollectionComparator

public CollectionComparator<ModelledFeature> getFeatureCollectionComparator()

Getter for the field featureCollectionComparator.

Returns:

a CollectionComparator object.

isCheckComplexesAsInteractors

public boolean isCheckComplexesAsInteractors()

isCheckComplexesAsInteractors

Specified by:

isCheckComplexesAsInteractors in interface CustomizableModelledParticipantComparator<ModelledEntity>

Returns:

a boolean.

setCheckComplexesAsInteractors

public void setCheckComplexesAsInteractors(boolean checkComplexesAsInteractors)

setCheckComplexesAsInteractors

Specified by:

setCheckComplexesAsInteractors in interface CustomizableModelledParticipantComparator<ModelledEntity>

Parameters:

checkComplexesAsInteractors - a boolean.

clearProcessedComplexes

public void clearProcessedComplexes()

clearProcessedComplexes

Specified by:

clearProcessedComplexes in interface CustomizableModelledParticipantComparator<ModelledEntity>

compare

public int compare(ModelledEntity bioParticipant1,
                   ModelledEntity bioParticipant2)

It will compare the basic properties of a biological participant using ParticipantInteractorComparator. This comparator will ignore all the other properties of a biological participant.

Specified by:

compare in interface Comparator<ModelledEntity>

Parameters:

bioParticipant1 - a ModelledEntity object.

bioParticipant2 - a ModelledEntity object.

Returns:

a int.