Package psidev.psi.mi.jami.utils.comparator.participant

Class ModelledParticipantComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.ModelledParticipantComparator

All Implemented Interfaces:

Comparator<ModelledParticipant>, CustomizableModelledParticipantComparator<ModelledParticipant>

Direct Known Subclasses:

UnambiguousExactModelledParticipantComparator, UnambiguousModelledParticipantComparator

public class ModelledParticipantComparator
extends Object
implements CustomizableModelledParticipantComparator<ModelledParticipant>

Basic biological participant comparator. It will compare the basic properties of a biological participant using ParticipantBaseComparator. If the participants are both ModelledParticipantPool, it will use ModelledParticipantPoolComparator to compare them This comparator will ignore all the other properties of a biological participant.

Since:

13/02/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ModelledParticipantComparator()	Constructor for ModelledParticipantComparator.
ModelledParticipantComparator(ModelledParticipantPoolComparator poolComparator)	Creates a new ComponentComparator

Method Summary

Modifier and Type	Method	Description
void	clearProcessedComplexes()	clearProcessedComplexes
int	compare(ModelledParticipant bioParticipant1, ModelledParticipant bioParticipant2)	It will compare the basic properties of a biological participant using ParticipantBaseComparator.
ModelledParticipantPoolComparator	getParticipantPoolComparator()	getParticipantPoolComparator
boolean	isCheckComplexesAsInteractors()	isCheckComplexesAsInteractors
void	setCheckComplexesAsInteractors(boolean checkComplexesAsInteractors)	setCheckComplexesAsInteractors
void	setPoolComparator(ModelledParticipantPoolComparator poolComparator)	Setter for the field poolComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

ModelledParticipantComparator

public ModelledParticipantComparator(ModelledParticipantPoolComparator poolComparator)

Creates a new ComponentComparator

Parameters:

poolComparator - a ModelledParticipantPoolComparator object.

ModelledParticipantComparator

public ModelledParticipantComparator()

Constructor for ModelledParticipantComparator.

Method Detail

getParticipantPoolComparator

public ModelledParticipantPoolComparator getParticipantPoolComparator()

getParticipantPoolComparator

Returns:

a ModelledParticipantPoolComparator object.

setPoolComparator

public void setPoolComparator(ModelledParticipantPoolComparator poolComparator)

Setter for the field poolComparator.

Parameters:

poolComparator - a ModelledParticipantPoolComparator object.

isCheckComplexesAsInteractors

public boolean isCheckComplexesAsInteractors()

isCheckComplexesAsInteractors

Specified by:

isCheckComplexesAsInteractors in interface CustomizableModelledParticipantComparator<ModelledParticipant>

Returns:

a boolean.

setCheckComplexesAsInteractors

public void setCheckComplexesAsInteractors(boolean checkComplexesAsInteractors)

setCheckComplexesAsInteractors

Specified by:

setCheckComplexesAsInteractors in interface CustomizableModelledParticipantComparator<ModelledParticipant>

Parameters:

checkComplexesAsInteractors - a boolean.

clearProcessedComplexes

public void clearProcessedComplexes()

clearProcessedComplexes

Specified by:

clearProcessedComplexes in interface CustomizableModelledParticipantComparator<ModelledParticipant>

compare

public int compare(ModelledParticipant bioParticipant1,
                   ModelledParticipant bioParticipant2)

It will compare the basic properties of a biological participant using ParticipantBaseComparator. If the participants are both ModelledParticipantPool, it will use ModelledParticipantPoolComparator to compare them This comparator will ignore all the other properties of a biological participant.

Specified by:

compare in interface Comparator<ModelledParticipant>

Parameters:

bioParticipant1 - a ModelledParticipant object.

bioParticipant2 - a ModelledParticipant object.

Returns:

a int.