Package psidev.psi.mi.jami.utils.comparator.participant

Class UnambiguousExactEntityBaseComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.EntityBaseComparator

psidev.psi.mi.jami.utils.comparator.participant.UnambiguousExactEntityBaseComparator

All Implemented Interfaces:

Comparator<Entity>

public class UnambiguousExactEntityBaseComparator
extends EntityBaseComparator

Unambiguous exact entity comparator It will first compare the interactors using UnambiguousExactInteractorComparator. If both interactors are the same, it will look at the stoichiometry (participant with lower stoichiometry will come first).

This comparator will ignore all the other properties of a participant.

Since:

18/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousExactEntityBaseComparator()
UnambiguousExactEntityBaseComparator(UnambiguousExactInteractorComparator comparator)	Constructor for UnambiguousExactEntityBaseComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Entity participant1, Entity participant2)	Use UnambiguousExactParticipantBaseComparator to know if two participants are equals.
int	compare(Entity participant1, Entity participant2)	It will first compare the interactors using UnambiguousExactInteractorComparator.
UnambiguousExactInteractorComparator	getInteractorComparator()	Getter for the field interactorComparator.
static int	hashCode(Entity participant)

Methods inherited from class psidev.psi.mi.jami.utils.comparator.participant.EntityBaseComparator

getStoichiometryComparator, isIgnoreInteractors, isIgnoreStoichiometry, setIgnoreInteractors, setIgnoreStoichiometry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousExactEntityBaseComparator

public UnambiguousExactEntityBaseComparator()

Creates a new UnambiguousExactParticipantBaseComparator. It will use a UnambiguousExactInteractorComparator to compare interactors, a UnambiguousCvTermComparator to compare biological roles.

UnambiguousExactEntityBaseComparator

public UnambiguousExactEntityBaseComparator(UnambiguousExactInteractorComparator comparator)

Constructor for UnambiguousExactEntityBaseComparator.

Parameters:

comparator - a UnambiguousExactInteractorComparator object.

Method Detail

areEquals

public static boolean areEquals(Entity participant1,
                                Entity participant2)

Use UnambiguousExactParticipantBaseComparator to know if two participants are equals.

Parameters:

participant1 - a Entity object.

participant2 - a Entity object.

Returns:

true if the two participants are equal

hashCode

public static int hashCode(Entity participant)

hashCode

Parameters:

participant - a Entity object.

Returns:

the hashcode consistent with the equals method for this comparator

getInteractorComparator

public UnambiguousExactInteractorComparator getInteractorComparator()

Description copied from class: EntityBaseComparator

Getter for the field interactorComparator.

Overrides:

getInteractorComparator in class EntityBaseComparator

Returns:

a InteractorComparator object.

compare

public int compare(Entity participant1,
                   Entity participant2)

It will first compare the interactors using UnambiguousExactInteractorComparator. If both interactors are the same, it will look at the stoichiometry (participant with lower stoichiometry will come first).

Specified by:

compare in interface Comparator<Entity>

Overrides:

compare in class EntityBaseComparator

Parameters:

participant1 - a Entity object.

participant2 - a Entity object.

Returns:

a int.