Package psidev.psi.mi.jami.utils.comparator.participant

Class UnambiguousExactModelledParticipantInteractorComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.participant.ParticipantInteractorComparator<ModelledEntity>

psidev.psi.mi.jami.utils.comparator.participant.UnambiguousExactModelledParticipantInteractorComparator

All Implemented Interfaces:

Comparator<ModelledEntity>, CustomizableModelledParticipantComparator<ModelledEntity>

public class UnambiguousExactModelledParticipantInteractorComparator
extends ParticipantInteractorComparator<ModelledEntity>
implements CustomizableModelledParticipantComparator<ModelledEntity>

Unambiguous exact biological participant comparator based on the interactor only. It will compare the basic properties of an interactor using UnambiguousExactInteractorComparator. This comparator will ignore all the other properties of a biological participant.

Since:

30/05/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousExactModelledParticipantInteractorComparator()	Creates a new UnambiguousExactModelledParticipantInteractorComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(ModelledEntity component1, ModelledEntity component2)	Use UnambiguousExactModelledParticipantInteractorComparator to know if two biological participants are equals.
void	clearProcessedComplexes()	clearProcessedComplexes
int	compare(ModelledEntity component1, ModelledEntity component2)	It will compare the basic properties of an interactor using UnambiguousInteractorComparator.
UnambiguousExactInteractorComparator	getInteractorComparator()	Getter for the field interactorComparator.
boolean	isCheckComplexesAsInteractors()	isCheckComplexesAsInteractors
void	setCheckComplexesAsInteractors(boolean checkComplexesAsInteractors)	setCheckComplexesAsInteractors

Methods inherited from class psidev.psi.mi.jami.utils.comparator.participant.ParticipantInteractorComparator

setInteractorComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousExactModelledParticipantInteractorComparator

public UnambiguousExactModelledParticipantInteractorComparator()

Creates a new UnambiguousExactModelledParticipantInteractorComparator. It will use a UnambiguousExactInteractorComparator to compare the basic properties of an interactor.

Method Detail

getInteractorComparator

public UnambiguousExactInteractorComparator getInteractorComparator()

Description copied from class: ParticipantInteractorComparator

Getter for the field interactorComparator.

Overrides:

getInteractorComparator in class ParticipantInteractorComparator<ModelledEntity>

Returns:

a InteractorComparator object.

compare

public int compare(ModelledEntity component1,
                   ModelledEntity component2)

It will compare the basic properties of an interactor using UnambiguousInteractorComparator. This comparator will ignore all the other properties of a biological participant.

Specified by:

compare in interface Comparator<ModelledEntity>

Overrides:

compare in class ParticipantInteractorComparator<ModelledEntity>

Parameters:

component1 - a T object.

component2 - a T object.

Returns:

a int.

areEquals

public static boolean areEquals(ModelledEntity component1,
                                ModelledEntity component2)

Use UnambiguousExactModelledParticipantInteractorComparator to know if two biological participants are equals.

Parameters:

component1 - a ModelledEntity object.

component2 - a ModelledEntity object.

Returns:

true if the two biological participants are equal

isCheckComplexesAsInteractors

public boolean isCheckComplexesAsInteractors()

isCheckComplexesAsInteractors

Specified by:

isCheckComplexesAsInteractors in interface CustomizableModelledParticipantComparator<ModelledEntity>

Returns:

a boolean.

setCheckComplexesAsInteractors

public void setCheckComplexesAsInteractors(boolean checkComplexesAsInteractors)

setCheckComplexesAsInteractors

Specified by:

setCheckComplexesAsInteractors in interface CustomizableModelledParticipantComparator<ModelledEntity>

Parameters:

checkComplexesAsInteractors - a boolean.

clearProcessedComplexes

public void clearProcessedComplexes()

clearProcessedComplexes

Specified by:

clearProcessedComplexes in interface CustomizableModelledParticipantComparator<ModelledEntity>