Uses of Class
psidev.psi.mi.jami.xml.PsiXmlType

Packages that use PsiXmlType

Package	Description
psidev.psi.mi.jami.commons
psidev.psi.mi.jami.xml
psidev.psi.mi.jami.xml.io.writer
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.model.extension.factory

Uses of PsiXmlType in psidev.psi.mi.jami.commons

Methods in psidev.psi.mi.jami.commons with parameters of type PsiXmlType

Modifier and Type	Method	Description
Map<String,Object>	MIWriterOptionFactory.getDefaultXmlOptions(Object output, InteractionCategory objectCategory, ComplexType complexType, PsiXmlType type, PsiXmlVersion version)	getDefaultXmlOptions.
Map<String,Object>	MIWriterOptionFactory.getXmlOptions(Object output, InteractionCategory objectCategory, ComplexType complexType, PsiXmlType xmlType, PsiXmlObjectCache elementCache, Set<Experiment> experimentSet, Set<Interactor> interactorSet, Set<String> availabilitySet, Set<Interaction> interactionSet, Source defaultSource, XMLGregorianCalendar defaultReleaseDate, Collection<Annotation> defaultEntryAnnotations, boolean writeComplexAsInteractors, boolean extended, PsiXmlVersion version)	Create the options for the PSI-XML InteractionWriter.

Uses of PsiXmlType in psidev.psi.mi.jami.xml

Methods in psidev.psi.mi.jami.xml that return PsiXmlType

Modifier and Type	Method	Description
static PsiXmlType	PsiXmlType.valueOf(String name)	Returns the enum constant of this type with the specified name.
static PsiXmlType[]	PsiXmlType.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Uses of PsiXmlType in psidev.psi.mi.jami.xml.io.writer

Methods in psidev.psi.mi.jami.xml.io.writer with parameters of type PsiXmlType

Modifier and Type	Method	Description
protected void	AbstractXmlWriter.initialiseSubWriters(boolean extended, boolean named, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType)	initialiseSubWriters.

Uses of PsiXmlType in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements with parameters of type PsiXmlType

Modifier and Type	Method	Description
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createDefaultPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createDefaultPsiXmlInteractionWriters.
static PsiXmlElementWriter<AbstractExperimentalInteractor>	PsiXmlElementWriterFactory.createExperimentalInteractorWriter(XMLStreamWriter streamWriter, PsiXmlVersion version, PsiXmlObjectCache objectIndex, PsiXmlType xmlType)	createExperimentalInteractorWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createExtendedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createExtendedPsiXmlInteractionWriters.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createInteractionWritersFor(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, boolean extended, boolean named, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlPublicationWriter publicationWriter)	createInteractionWritersFor.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createNamedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createNamedPsiXmlInteractionWriters.
static <P extends ParticipantCandidate> PsiXmlElementWriter<P>[]	PsiXmlElementWriterFactory.createParticipantCandidateWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlElementWriter<ModelledFeature> modelledFeatureWriter, PsiXmlElementWriter<FeatureEvidence> featureEvidenceWriter)	createParticipantCandidateWriter.
static <P extends Participant> PsiXmlParticipantWriter<P>[]	PsiXmlElementWriterFactory.createParticipantWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter<Confidence> confidenceWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlParameterWriter parameterWriter)	createParticipantWriter.

Uses of PsiXmlType in psidev.psi.mi.jami.xml.model.extension.factory

Methods in psidev.psi.mi.jami.xml.model.extension.factory with parameters of type PsiXmlType

Modifier and Type	Method	Description
InteractionWriter	PsiXmlWriterFactory.createPsiXmlBinaryWriter(InteractionCategory interactionCategory, PsiXmlVersion version, PsiXmlType type, boolean extended, boolean named)	createPsiXmlBinaryWriter.
InteractionWriter	PsiXmlWriterFactory.createPsiXmlWriter(InteractionCategory interactionCategory, ComplexType complexType, PsiXmlType type, PsiXmlVersion version, boolean extended, boolean named)	createPsiXmlWriter.
InteractionWriter	PsiXmlWriterFactory.createPsiXmlWriter(InteractionCategory interactionCategory, PsiXmlType type, PsiXmlVersion version, boolean extended, boolean named)	createPsiXmlWriter.