Package psidev.psi.mi.jami.xml.io.parser

Class FullXmlModelledParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser<ModelledInteraction>

psidev.psi.mi.jami.xml.io.parser.FullXmlModelledParser

All Implemented Interfaces:

FullPsiXmlParser<ModelledInteraction>, PsiXmlParser<ModelledInteraction>

public class FullXmlModelledParser
extends AbstractFullPsiXmlParser<ModelledInteraction>

Full Parser generating modelled interaction objects and ignore experimental details. It will load the all entrySet so is consuming a lot of memory in case of large files but is very performant for small files

Since:

08/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullXmlModelledParser(File file)	Constructor for FullXmlModelledParser.
FullXmlModelledParser(InputStream inputStream)	Constructor for FullXmlModelledParser.
FullXmlModelledParser(Reader reader)	Constructor for FullXmlModelledParser.
FullXmlModelledParser(URL url)	Constructor for FullXmlModelledParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser

close, createPsiXmlExceptionFrom, getEntrySet, getInteractorFactory, getListener, getVersion, hasFinished, parseEntrySet, parseNextInteraction, reInit, setCacheOfObjects, setInteractorFactory, setListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FullXmlModelledParser

public FullXmlModelledParser(File file)
                      throws javax.xml.bind.JAXBException,
                             FileNotFoundException

Constructor for FullXmlModelledParser.

Parameters:

file - a File object.

Throws:

javax.xml.bind.JAXBException - if any.

FileNotFoundException - if any.

FullXmlModelledParser

public FullXmlModelledParser(InputStream inputStream)
                      throws javax.xml.bind.JAXBException

Constructor for FullXmlModelledParser.

Parameters:

inputStream - a InputStream object.

Throws:

javax.xml.bind.JAXBException - if any.

FullXmlModelledParser

public FullXmlModelledParser(Reader reader)
                      throws javax.xml.bind.JAXBException

Constructor for FullXmlModelledParser.

Parameters:

reader - a Reader object.

Throws:

javax.xml.bind.JAXBException - if any.

FullXmlModelledParser

public FullXmlModelledParser(URL url)
                      throws IOException,
                             javax.xml.bind.JAXBException

Constructor for FullXmlModelledParser.

Parameters:

url - a URL object.

Throws:

IOException - if any.

javax.xml.bind.JAXBException - if any.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractFullPsiXmlParser<ModelledInteraction>

Returns:

a Unmarshaller object.

Throws:

javax.xml.bind.JAXBException - if any.