Package psidev.psi.mi.jami.xml.io.parser

Class LightXmlParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser<Interaction>

psidev.psi.mi.jami.xml.io.parser.LightXmlParser

All Implemented Interfaces:

PsiXmlParser<Interaction>

public class LightXmlParser
extends AbstractPsiXmlParser<Interaction>

Parser generating basic interaction objects and ignore experimental details

Since:

16/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightXmlParser(File file)	Constructor for LightXmlParser.
LightXmlParser(InputStream inputStream)	Constructor for LightXmlParser.
LightXmlParser(Reader reader)	Constructor for LightXmlParser.
LightXmlParser(URL url)	Constructor for LightXmlParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.
protected void	parseAvailabilityList(XmlEntryContext entryContext)	parseAvailabilityList.
protected void	parseExperimentList()	parseExperimentList.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser

close, containsUnresolvedReferences, createPsiXmlExceptionFrom, getCurrentElement, getInteractorFactory, getListener, getNextPsiXmlStartElement, getStreamReader, getVersion, hasFinished, loadEntry, parseAttributeList, parseInteractionList, parseInteractionTag, parseInteractorList, parseNextInteraction, parseNextPreLoadedInteraction, parseSource, processAvailabilityList, processEntry, processEntryAndLoadNextInteraction, processUnexpectedNode, reInit, setCacheOfObjects, setCurrentElement, setInteractorFactory, setListener, skipNextElement, unmarshallInteraction

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightXmlParser

public LightXmlParser(File file)

Constructor for LightXmlParser.

Parameters:

file - a File object.

LightXmlParser

public LightXmlParser(InputStream inputStream)

Constructor for LightXmlParser.

Parameters:

inputStream - a InputStream object.

LightXmlParser

public LightXmlParser(URL url)

Constructor for LightXmlParser.

Parameters:

url - a URL object.

LightXmlParser

public LightXmlParser(Reader reader)

Constructor for LightXmlParser.

Parameters:

reader - a Reader object.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractPsiXmlParser<Interaction>

Returns:

the unmarshaller with the class context

Throws:

javax.xml.bind.JAXBException - if any.

parseExperimentList

protected void parseExperimentList()
                            throws PsiXmlParserException

parseExperimentList.

Overrides:

parseExperimentList in class AbstractPsiXmlParser<Interaction>

Throws:

PsiXmlParserException - if any.

parseAvailabilityList

protected void parseAvailabilityList(XmlEntryContext entryContext)
                              throws PsiXmlParserException

parseAvailabilityList.

Overrides:

parseAvailabilityList in class AbstractPsiXmlParser<Interaction>

Parameters:

entryContext - a XmlEntryContext object.

Throws:

PsiXmlParserException - if any.