Package psidev.psi.mi.jami.xml

Class XmlEntryContext

java.lang.Object

psidev.psi.mi.jami.xml.XmlEntryContext

public class XmlEntryContext
extends Object

The xml entry context is a context threadlocal that will be valid for the whole xml entry but will be cleared after each entry in the entrySet

Since:

26/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

Modifier and Type	Method	Description
void	clear()	clear.
Entry	getCurrentEntry()	Getter for the field currentEntry.
static XmlEntryContext	getInstance()	Getter for the field instance.
XmlInteractorFactory	getInteractorFactory()	Getter for the field interactorFactory.
PsiXmlParserListener	getListener()	Getter for the field listener.
boolean	hasInferredInteractions()	hasInferredInteractions.
boolean	hasUnresolvedReferences()	hasUnresolvedReferences.
void	initialiseInferredInteractionList()	initialiseInferredInteractionList.
void	initialiseReferencesList()	initialiseReferencesList.
void	registerAvailability(int id, AbstractAvailability o)	registerAvailability.
void	registerBindingFeature(BindingFeatures infer)	registerBindingFeature.
void	registerComplex(int id, Complex o)	registerComplex.
void	registerComplexFeature(int id, ModelledFeature o)	registerComplexFeature.
void	registerComplexParticipant(int id, ModelledEntity o)	registerComplexParticipant.
void	registerExperiment(int id, Experiment o)	registerExperiment.
void	registerFeature(int id, Feature o)	registerFeature.
void	registerInferredInteraction(AbstractInferredInteraction infer)	registerInferredInteraction.
void	registerInteraction(int id, Interaction o)	registerInteraction.
void	registerInteractor(int id, Interactor o)	registerInteractor.
void	registerParticipant(int id, Entity o)	registerParticipant.
void	registerReference(XmlIdReference ref)	registerReference.
void	registerVariableParameterValue(int id, VariableParameterValue o)	registerVariableParameterValue.
static void	remove()	remove.
void	resolveInferredInteractionRefs()	resolveInferredInteractionRefs.
void	resolveInteractorAndExperimentRefs()	resolveInteractorAndExperimentRefs.
void	setCurrentSource(Entry entry)	setCurrentSource.
void	setElementCache(PsiXmlIdCache elementCache)	Setter for the field elementCache.
void	setInteractorFactory(XmlInteractorFactory interactorFactory)	Setter for the field interactorFactory.
void	setListener(PsiXmlParserListener listener)	Setter for the field listener.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getInstance

public static XmlEntryContext getInstance()

Getter for the field instance.

Returns:

a XmlEntryContext object.

remove

public static void remove()

remove.

clear

public void clear()

clear.

getInteractorFactory

public XmlInteractorFactory getInteractorFactory()

Getter for the field interactorFactory.

Returns:

a XmlInteractorFactory object.

setInteractorFactory

public void setInteractorFactory(XmlInteractorFactory interactorFactory)

Setter for the field interactorFactory.

Parameters:

interactorFactory - a XmlInteractorFactory object.

getCurrentEntry

public Entry getCurrentEntry()

Getter for the field currentEntry.

Returns:

a Entry object.

setCurrentSource

public void setCurrentSource(Entry entry)

setCurrentSource.

Parameters:

entry - a Entry object.

getListener

public PsiXmlParserListener getListener()

Getter for the field listener.

Returns:

a PsiXmlParserListener object.

setListener

public void setListener(PsiXmlParserListener listener)

Setter for the field listener.

Parameters:

listener - a PsiXmlParserListener object.

setElementCache

public void setElementCache(PsiXmlIdCache elementCache)

Setter for the field elementCache.

Parameters:

elementCache - a PsiXmlIdCache object.

registerAvailability

public void registerAvailability(int id,
                                 AbstractAvailability o)

registerAvailability.

Parameters:

id - a int.

o - a AbstractAvailability object.

registerExperiment

public void registerExperiment(int id,
                               Experiment o)

registerExperiment.

Parameters:

id - a int.

o - a Experiment object.

registerInteractor

public void registerInteractor(int id,
                               Interactor o)

registerInteractor.

Parameters:

id - a int.

o - a Interactor object.

registerInteraction

public void registerInteraction(int id,
                                Interaction o)

registerInteraction.

Parameters:

id - a int.

o - a Interaction object.

registerParticipant

public void registerParticipant(int id,
                                Entity o)

registerParticipant.

Parameters:

id - a int.

o - a Entity object.

registerFeature

public void registerFeature(int id,
                            Feature o)

registerFeature.

Parameters:

id - a int.

o - a Feature object.

registerComplexParticipant

public void registerComplexParticipant(int id,
                                       ModelledEntity o)

registerComplexParticipant.

Parameters:

id - a int.

o - a ModelledEntity object.

registerComplexFeature

public void registerComplexFeature(int id,
                                   ModelledFeature o)

registerComplexFeature.

Parameters:

id - a int.

o - a ModelledFeature object.

registerVariableParameterValue

public void registerVariableParameterValue(int id,
                                           VariableParameterValue o)

registerVariableParameterValue.

Parameters:

id - a int.

o - a VariableParameterValue object.

registerComplex

public void registerComplex(int id,
                            Complex o)

registerComplex.

Parameters:

id - a int.

o - a Complex object.

registerInferredInteraction

public void registerInferredInteraction(AbstractInferredInteraction infer)

registerInferredInteraction.

Parameters:

infer - a AbstractInferredInteraction object.

registerBindingFeature

public void registerBindingFeature(BindingFeatures infer)

registerBindingFeature.

Parameters:

infer - a BindingFeatures object.

registerReference

public void registerReference(XmlIdReference ref)

registerReference.

Parameters:

ref - a XmlIdReference object.

hasInferredInteractions

public boolean hasInferredInteractions()

hasInferredInteractions.

Returns:

a boolean.

hasUnresolvedReferences

public boolean hasUnresolvedReferences()

hasUnresolvedReferences.

Returns:

a boolean.

initialiseInferredInteractionList

public void initialiseInferredInteractionList()

initialiseInferredInteractionList.

initialiseReferencesList

public void initialiseReferencesList()

initialiseReferencesList.

resolveInteractorAndExperimentRefs

public void resolveInteractorAndExperimentRefs()

resolveInteractorAndExperimentRefs.

resolveInferredInteractionRefs

public void resolveInferredInteractionRefs()

resolveInferredInteractionRefs.