Package psidev.psi.mi.jami.xml.io.parser

Class XmlBinaryEvidenceParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractPsixmlBinaryParser<InteractionEvidence,BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.io.parser.XmlBinaryEvidenceParser

All Implemented Interfaces:

PsiXmlParser<BinaryInteractionEvidence>

public class XmlBinaryEvidenceParser
extends AbstractPsixmlBinaryParser<InteractionEvidence,BinaryInteractionEvidence>

Xml parser creating binary interaction evidences

Since:

16/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlBinaryEvidenceParser(File file)	Constructor for XmlBinaryEvidenceParser.
XmlBinaryEvidenceParser(InputStream inputStream)	Constructor for XmlBinaryEvidenceParser.
XmlBinaryEvidenceParser(Reader reader)	Constructor for XmlBinaryEvidenceParser.
XmlBinaryEvidenceParser(URL url)	Constructor for XmlBinaryEvidenceParser.

Method Summary

Modifier and Type	Method	Description
protected ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence>	initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractPsixmlBinaryParser

close, getDelegateParser, getExpansionMethod, getInteractorFactory, getListener, getVersion, hasFinished, instantiateInteractionFactory, parseNextInteraction, reInit, setCacheOfObjects, setExpansionMethod, setInteractorFactory, setListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XmlBinaryEvidenceParser

public XmlBinaryEvidenceParser(File file)
                        throws FileNotFoundException,
                               XMLStreamException,
                               javax.xml.bind.JAXBException

Constructor for XmlBinaryEvidenceParser.

Parameters:

file - a File object.

Throws:

FileNotFoundException - if any.

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

XmlBinaryEvidenceParser

public XmlBinaryEvidenceParser(InputStream inputStream)
                        throws XMLStreamException,
                               javax.xml.bind.JAXBException

Constructor for XmlBinaryEvidenceParser.

Parameters:

inputStream - a InputStream object.

Throws:

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

XmlBinaryEvidenceParser

public XmlBinaryEvidenceParser(URL url)
                        throws IOException,
                               XMLStreamException,
                               javax.xml.bind.JAXBException

Constructor for XmlBinaryEvidenceParser.

Parameters:

url - a URL object.

Throws:

IOException - if any.

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

XmlBinaryEvidenceParser

public XmlBinaryEvidenceParser(Reader reader)
                        throws XMLStreamException,
                               javax.xml.bind.JAXBException

Constructor for XmlBinaryEvidenceParser.

Parameters:

reader - a Reader object.

Throws:

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

Method Detail

initialiseDefaultExpansionMethod

protected ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> initialiseDefaultExpansionMethod()

initialiseDefaultExpansionMethod.

Specified by:

initialiseDefaultExpansionMethod in class AbstractPsixmlBinaryParser<InteractionEvidence,BinaryInteractionEvidence>

Returns:

a ComplexExpansionMethod object.