Package psidev.psi.mi.jami.xml.io.parser

Class AbstractPsixmlBinaryParser<T extends Interaction,B extends BinaryInteraction>

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractPsixmlBinaryParser<T,B>

All Implemented Interfaces:

PsiXmlParser<B>

Direct Known Subclasses:

FullXmlBinaryEvidenceParser, FullXmlBinaryParser, FullXmlModelledBinaryParser, LightFullXmlBinaryParser, LightXmlBinaryParser, XmlBinaryEvidenceParser, XmlBinaryParser, XmlModelledBinaryParser

public abstract class AbstractPsixmlBinaryParser<T extends Interaction,B extends BinaryInteraction>
extends Object
implements PsiXmlParser<B>

Abstract class for a binary interaction parser

Since:

17/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
AbstractPsixmlBinaryParser(PsiXmlParser<T> delegateParser)	Constructor for AbstractPsixmlBinaryParser.

Method Summary

Modifier and Type	Method	Description
void	close()	close.
protected PsiXmlParser<T>	getDelegateParser()	Getter for the field delegateParser.
protected ComplexExpansionMethod<T,B>	getExpansionMethod()	Getter for the field expansionMethod.
XmlInteractorFactory	getInteractorFactory()	getInteractorFactory.
PsiXmlParserListener	getListener()	getListener.
PsiXmlVersion	getVersion()	getVersion.
boolean	hasFinished()	hasFinished.
protected abstract ComplexExpansionMethod<T,B>	initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected BinaryInteractionFactory	instantiateInteractionFactory()	instantiateInteractionFactory.
B	parseNextInteraction()	parseNextInteraction.
void	reInit()	reInit.
void	setCacheOfObjects(PsiXmlIdCache indexOfObjects)	setCacheOfObjects.
void	setExpansionMethod(ComplexExpansionMethod<T,B> expansionMethod)	Setter for the field expansionMethod.
void	setInteractorFactory(XmlInteractorFactory factory)	setInteractorFactory.
void	setListener(PsiXmlParserListener listener)	setListener.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractPsixmlBinaryParser

public AbstractPsixmlBinaryParser(PsiXmlParser<T> delegateParser)

Constructor for AbstractPsixmlBinaryParser.

Parameters:

delegateParser - a PsiXmlParser object.

Method Detail

parseNextInteraction

public B parseNextInteraction()
                       throws PsiXmlParserException

parseNextInteraction.

Specified by:

parseNextInteraction in interface PsiXmlParser<T extends Interaction>

Returns:

a T object.

Throws:

PsiXmlParserException - if any.

hasFinished

public boolean hasFinished()
                    throws PsiXmlParserException

hasFinished.

Specified by:

hasFinished in interface PsiXmlParser<T extends Interaction>

Returns:

a boolean.

Throws:

PsiXmlParserException - if any.

reInit

public void reInit()
            throws MIIOException

reInit.

Specified by:

reInit in interface PsiXmlParser<T extends Interaction>

Throws:

MIIOException - if any.

close

public void close()

close.

Specified by:

close in interface PsiXmlParser<T extends Interaction>

getListener

public PsiXmlParserListener getListener()

getListener.

Specified by:

getListener in interface PsiXmlParser<T extends Interaction>

Returns:

a PsiXmlParserListener object.

setListener

public void setListener(PsiXmlParserListener listener)

setListener.

Specified by:

setListener in interface PsiXmlParser<T extends Interaction>

Parameters:

listener - a PsiXmlParserListener object.

setExpansionMethod

public void setExpansionMethod(ComplexExpansionMethod<T,B> expansionMethod)

Setter for the field expansionMethod.

Parameters:

expansionMethod - a ComplexExpansionMethod object.

instantiateInteractionFactory

protected BinaryInteractionFactory instantiateInteractionFactory()

instantiateInteractionFactory.

Returns:

a BinaryInteractionFactory object.

setCacheOfObjects

public void setCacheOfObjects(PsiXmlIdCache indexOfObjects)

setCacheOfObjects.

Specified by:

setCacheOfObjects in interface PsiXmlParser<T extends Interaction>

Parameters:

indexOfObjects - a PsiXmlIdCache object.

getInteractorFactory

public XmlInteractorFactory getInteractorFactory()

getInteractorFactory.

Specified by:

getInteractorFactory in interface PsiXmlParser<T extends Interaction>

Returns:

a XmlInteractorFactory object.

setInteractorFactory

public void setInteractorFactory(XmlInteractorFactory factory)

setInteractorFactory.

Specified by:

setInteractorFactory in interface PsiXmlParser<T extends Interaction>

Parameters:

factory - a XmlInteractorFactory object.

getVersion

public PsiXmlVersion getVersion()

getVersion.

Specified by:

getVersion in interface PsiXmlParser<T extends Interaction>

Returns:

a PsiXmlVersion object.

getExpansionMethod

protected ComplexExpansionMethod<T,B> getExpansionMethod()

Getter for the field expansionMethod.

Returns:

a ComplexExpansionMethod object.

initialiseDefaultExpansionMethod

protected abstract ComplexExpansionMethod<T,B> initialiseDefaultExpansionMethod()

initialiseDefaultExpansionMethod.

Returns:

a ComplexExpansionMethod object.

getDelegateParser

protected PsiXmlParser<T> getDelegateParser()

Getter for the field delegateParser.

Returns:

a PsiXmlParser object.