Package psidev.psi.mi.jami.xml.io.parser

Class XmlBinaryParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractPsixmlBinaryParser<Interaction,BinaryInteraction>

psidev.psi.mi.jami.xml.io.parser.XmlBinaryParser

All Implemented Interfaces:

PsiXmlParser<BinaryInteraction>

public class XmlBinaryParser
extends AbstractPsixmlBinaryParser<Interaction,BinaryInteraction>

Xml parser creating binary interactions that can be a mix of interaction evidences and abstract interactions

Since:

16/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlBinaryParser(File file)	Constructor for XmlBinaryParser.
XmlBinaryParser(InputStream inputStream)	Constructor for XmlBinaryParser.
XmlBinaryParser(Reader reader)	Constructor for XmlBinaryParser.
XmlBinaryParser(URL url)	Constructor for XmlBinaryParser.

Method Summary

Modifier and Type	Method	Description
protected ComplexExpansionMethod<Interaction,BinaryInteraction>	initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractPsixmlBinaryParser

close, getDelegateParser, getExpansionMethod, getInteractorFactory, getListener, getVersion, hasFinished, instantiateInteractionFactory, parseNextInteraction, reInit, setCacheOfObjects, setExpansionMethod, setInteractorFactory, setListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XmlBinaryParser

public XmlBinaryParser(File file)
                throws FileNotFoundException,
                       XMLStreamException,
                       javax.xml.bind.JAXBException

Constructor for XmlBinaryParser.

Parameters:

file - a File object.

Throws:

FileNotFoundException - if any.

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

XmlBinaryParser

public XmlBinaryParser(InputStream inputStream)
                throws XMLStreamException,
                       javax.xml.bind.JAXBException

Constructor for XmlBinaryParser.

Parameters:

inputStream - a InputStream object.

Throws:

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

XmlBinaryParser

public XmlBinaryParser(URL url)
                throws IOException,
                       XMLStreamException,
                       javax.xml.bind.JAXBException

Constructor for XmlBinaryParser.

Parameters:

url - a URL object.

Throws:

IOException - if any.

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

XmlBinaryParser

public XmlBinaryParser(Reader reader)
                throws XMLStreamException,
                       javax.xml.bind.JAXBException

Constructor for XmlBinaryParser.

Parameters:

reader - a Reader object.

Throws:

XMLStreamException - if any.

javax.xml.bind.JAXBException - if any.

Method Detail

initialiseDefaultExpansionMethod

protected ComplexExpansionMethod<Interaction,BinaryInteraction> initialiseDefaultExpansionMethod()

initialiseDefaultExpansionMethod.

Specified by:

initialiseDefaultExpansionMethod in class AbstractPsixmlBinaryParser<Interaction,BinaryInteraction>

Returns:

a ComplexExpansionMethod object.