Package psidev.psi.mi.jami.xml.io.parser

Class XmlComplexParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser<Complex>

psidev.psi.mi.jami.xml.io.parser.XmlComplexParser

All Implemented Interfaces:

PsiXmlParser<Complex>

public class XmlComplexParser
extends AbstractPsiXmlParser<Complex>

Parser generating biological complex objects and ignore experimental details

Since:

16/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlComplexParser(File file)	Constructor for XmlComplexParser.
XmlComplexParser(InputStream inputStream)	Constructor for XmlComplexParser.
XmlComplexParser(Reader reader)	Constructor for XmlComplexParser.
XmlComplexParser(URL url)	Constructor for XmlComplexParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.
protected void	parseAvailabilityList(XmlEntryContext entryContext)	parseAvailabilityList.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser

close, containsUnresolvedReferences, createPsiXmlExceptionFrom, getCurrentElement, getInteractorFactory, getListener, getNextPsiXmlStartElement, getStreamReader, getVersion, hasFinished, loadEntry, parseAttributeList, parseExperimentList, parseInteractionList, parseInteractionTag, parseInteractorList, parseNextInteraction, parseNextPreLoadedInteraction, parseSource, processAvailabilityList, processEntry, processEntryAndLoadNextInteraction, processUnexpectedNode, reInit, setCacheOfObjects, setCurrentElement, setInteractorFactory, setListener, skipNextElement, unmarshallInteraction

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XmlComplexParser

public XmlComplexParser(File file)

Constructor for XmlComplexParser.

Parameters:

file - a File object.

XmlComplexParser

public XmlComplexParser(InputStream inputStream)

Constructor for XmlComplexParser.

Parameters:

inputStream - a InputStream object.

XmlComplexParser

public XmlComplexParser(URL url)

Constructor for XmlComplexParser.

Parameters:

url - a URL object.

XmlComplexParser

public XmlComplexParser(Reader reader)

Constructor for XmlComplexParser.

Parameters:

reader - a Reader object.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractPsiXmlParser<Complex>

Returns:

the unmarshaller with the class context

Throws:

javax.xml.bind.JAXBException - if any.

parseAvailabilityList

protected void parseAvailabilityList(XmlEntryContext entryContext)
                              throws PsiXmlParserException

parseAvailabilityList.

Overrides:

parseAvailabilityList in class AbstractPsiXmlParser<Complex>

Parameters:

entryContext - a XmlEntryContext object.

Throws:

PsiXmlParserException - if any.