XmlInteractionEvidenceWriter (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter<I,ParticipantEvidence>
- - psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionEvidenceWriter<I>
  - - psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30.AbstractXmlInteractionEvidenceWriter<InteractionEvidence>
    - - psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30.XmlInteractionEvidenceWriter

All Implemented Interfaces:

CompactPsiXmlElementWriter<InteractionEvidence>, PsiXmlElementWriter<InteractionEvidence>, PsiXmlInteractionWriter<InteractionEvidence>

Direct Known Subclasses:

XmlNamedInteractionEvidenceWriter
```
public class XmlInteractionEvidenceWriter
extends AbstractXmlInteractionEvidenceWriter<InteractionEvidence>
implements CompactPsiXmlElementWriter<InteractionEvidence>
```
Compact XML 3.0 writer for an interaction evidence (with full experimental details).
Since:
```
18/11/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor	Description
`XmlInteractionEvidenceWriter(XMLStreamWriter writer, PsiXmlObjectCache objectIndex)`	Constructor for XmlInteractionEvidenceWriter.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`initialiseParticipantWriter()`	initialiseParticipantWriter.
`protected void`	`writeAvailability(InteractionEvidence object)`	writeAvailability.
`protected CvTerm`	`writeExperiments(InteractionEvidence object)`	writeExperiments.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30.AbstractXmlInteractionEvidenceWriter
getCausalRelationshipWriter, getVariableParameterValueSetWriter, initialiseCausalRelationshipWriter, initialiseConfidenceWriter, initialiseExperimentWriter, initialiseInferredInteractionWriter, initialiseInteractionTypeWriter, initialiseParameterWriter, initialiseXrefWriter, setCausalRelationshipWriter, setVariableParameterValueSetWriter, writeCausalRelationships, writeExperimentalVariableValues, writeOtherProperties

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionEvidenceWriter
extractDefaultExperimentFrom, getAvailabilityWriter, getConfidenceWriter, getParameterWriter, initialiseAvaliabilityWriter, initialiseDefaultExperiment, setAvailabilityWriter, setConfidenceWriter, setDefaultExperiment, setParameterWriter, writeAvailabilityDescription, writeAvailabilityRef, writeConfidences, writeInferredInteractions, writeModelled, writeNegative, writeOtherAttributes, writeParameters, writeStartInteraction

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter
collectInferredInteractionsFrom, getAttributeWriter, getChecksumWriter, getDefaultExperiment, getExperimentWriter, getInferredInteractionWriter, getInteractionTypeWriter, getObjectIndex, getParticipantWriter, getStreamWriter, getVersion, getXrefWriter, newExperiment, newPublication, newPublication, newXmlCvTerm, setAttributeWriter, setChecksumWriter, setComplexAsInteractor, setExperimentWriter, setInferredInteractionWriter, setInteractionTypeWriter, setParticipantWriter, setXrefWriter, write, writeAttribute, writeAttributes, writeComplexAsInteractor, writeExperimentDescription, writeExperimentRef, writeInteractionType, writeIntraMolecular, writeNames, writeParticipants, writeXref, writeXrefFromInteractionIdentifiers, writeXrefFromInteractionXrefs

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter
write

- Constructor Detail
  - XmlInteractionEvidenceWriter
```
public XmlInteractionEvidenceWriter(XMLStreamWriter writer,
                                    PsiXmlObjectCache objectIndex)
```
    Constructor for XmlInteractionEvidenceWriter.
    
    Parameters:
    
    writer - a XMLStreamWriter object.
    
    objectIndex - a PsiXmlObjectCache object.
- Method Detail
  - initialiseParticipantWriter
```
protected void initialiseParticipantWriter()
```
    initialiseParticipantWriter.
    
    Specified by:
    
    initialiseParticipantWriter in class AbstractXmlInteractionWriter<InteractionEvidence,ParticipantEvidence>
  - writeAvailability
```
protected void writeAvailability(InteractionEvidence object)
                          throws XMLStreamException
```
    writeAvailability.
    
    Specified by:
    
    writeAvailability in class AbstractXmlInteractionWriter<InteractionEvidence,ParticipantEvidence>
    
    Parameters:
    
    object - a T object.
    
    Throws:
    
    XMLStreamException - if any.
  - writeExperiments
```
protected CvTerm writeExperiments(InteractionEvidence object)
                           throws XMLStreamException
```
    writeExperiments.
    
    Overrides:
    
    writeExperiments in class AbstractXmlInteractionEvidenceWriter<InteractionEvidence>
    
    Parameters:
    
    object - a T object.
    
    Returns:
    
    a CvTerm object.
    
    Throws:
    
    XMLStreamException - if any.