Package psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30

Class XmlParticipantEvidenceWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantWriter<ParticipantEvidence,FeatureEvidence>

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantEvidenceWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30.AbstractXmlParticipantEvidenceWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30.XmlParticipantEvidenceWriter

All Implemented Interfaces:

CompactPsiXmlElementWriter<ParticipantEvidence>, PsiXmlElementWriter<ParticipantEvidence>, PsiXmlParticipantWriter<ParticipantEvidence>

Direct Known Subclasses:

XmlNamedParticipantEvidenceWriter

public class XmlParticipantEvidenceWriter
extends AbstractXmlParticipantEvidenceWriter
implements CompactPsiXmlElementWriter<ParticipantEvidence>

Compact XML 3.0 writer for a participant evidence with full experimental details

Since:

14/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlParticipantEvidenceWriter(XMLStreamWriter writer, PsiXmlObjectCache objectIndex)	Constructor for XmlParticipantEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseParticipantCandidateWriter()	initialiseParticipantCandidateWriter.
protected void	writeMolecule(Interactor interactor)	writeMolecule.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30.AbstractXmlParticipantEvidenceWriter

getParticipantCandidateWriter, getStoichiometryWriter, initialiseBiologicalRoleWriter, initialiseConfidenceWriter, initialiseCvWriter, initialiseFeatureWriter, initialiseHostOrganismWriter, initialiseInteractorWriter, initialiseParameterWriter, initialiseXrefWriter, setParticipantCandidateWriter, setStoichiometryWriter, writeOtherAttributes, writeParticipantPool, writeStoichiometry

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantEvidenceWriter

getConfidenceWriter, getExperimentalCvWriter, getHostOrganismWriter, getParameterWriter, setConfidenceWriter, setExperimentalCvWriter, setHostOrganismWriter, setParameterWriter, writeConfidences, writeExperimentalInteractor, writeExperimentalPreparations, writeExperimentalRoles, writeHostOrganisms, writeParameters, writeParticipantIdentificationMethods

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantWriter

getAliasWriter, getAttributeWriter, getBiologicalRoleWriter, getFeatureWriter, getInteractorWriter, getObjectIndex, getStreamWriter, getVersion, getXrefWriter, setAliasWriter, setAttributeWriter, setBiologicalRoleWriter, setComplexAsInteractor, setFeatureWriter, setInteractorWriter, setXrefWriter, write, writeAttributes, writeBiologicalRole, writeComplexAsInteractor, writeFeatures, writeInteractor, writeMoleculeDescription, writeMoleculeRef, writeNames, writeParticipant, writeXref, writeXrefFromParticipantXrefs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter

write

Constructor Detail

XmlParticipantEvidenceWriter

public XmlParticipantEvidenceWriter(XMLStreamWriter writer,
                                    PsiXmlObjectCache objectIndex)

Constructor for XmlParticipantEvidenceWriter.

Parameters:

writer - a XMLStreamWriter object.

objectIndex - a PsiXmlObjectCache object.

Method Detail

initialiseParticipantCandidateWriter

protected void initialiseParticipantCandidateWriter()

initialiseParticipantCandidateWriter.

Specified by:

initialiseParticipantCandidateWriter in class AbstractXmlParticipantEvidenceWriter

writeMolecule

protected void writeMolecule(Interactor interactor)
                      throws XMLStreamException

writeMolecule.

Specified by:

writeMolecule in class AbstractXmlParticipantWriter<ParticipantEvidence,FeatureEvidence>

Parameters:

interactor - a Interactor object.

Throws:

XMLStreamException - if any.