XmlNamedModelledInteractionWriter (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter<I,ModelledParticipant>
- - psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlModelledInteractionWriter<I>
  - - psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlModelledInteractionWriter<ModelledInteraction>
    - - psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25.XmlModelledInteractionWriter
      - psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25.XmlNamedModelledInteractionWriter

All Implemented Interfaces:

ExpandedPsiXmlElementWriter<ModelledInteraction>, PsiXmlElementWriter<ModelledInteraction>, PsiXmlInteractionWriter<ModelledInteraction>
```
public class XmlNamedModelledInteractionWriter
extends XmlModelledInteractionWriter
```
Expanded XML 2.5 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname. It will write cooperative effects as attributes
Since:
```
18/11/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor	Description
`XmlNamedModelledInteractionWriter(PsiXmlVersion version, XMLStreamWriter writer, PsiXmlObjectCache objectIndex)`	Constructor for XmlNamedModelledInteractionWriter.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`initialiseExperimentWriter()`	initialiseExperimentWriter.
`protected void`	`initialiseParticipantWriter()`	initialiseParticipantWriter.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25.XmlModelledInteractionWriter
writeExperiments

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlModelledInteractionWriter
extractDefaultExperimentFrom, initialiseConfidenceWriter, initialiseDefaultExperiment, initialiseInferredInteractionWriter, initialiseInteractionTypeWriter, initialiseParameterWriter, initialiseXrefWriter, setDefaultExperiment, writeCooperativeEffect, writeCooperativeEffectAttribute, writeInferredInteractions, writeOtherProperties, writeStartInteraction

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlModelledInteractionWriter
getAliasWriter, getConfidenceWriter, getParameterWriter, setAliasWriter, setConfidenceWriter, setParameterWriter, writeAttributes, writeAvailability, writeConfidences, writeModelled, writeNames, writeNegative, writeOtherAttributes, writeParameters

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter
collectInferredInteractionsFrom, getAttributeWriter, getChecksumWriter, getDefaultExperiment, getExperimentWriter, getInferredInteractionWriter, getInteractionTypeWriter, getObjectIndex, getParticipantWriter, getStreamWriter, getVersion, getXrefWriter, newExperiment, newPublication, newPublication, newXmlCvTerm, setAttributeWriter, setChecksumWriter, setComplexAsInteractor, setExperimentWriter, setInferredInteractionWriter, setInteractionTypeWriter, setParticipantWriter, setXrefWriter, write, writeAttribute, writeComplexAsInteractor, writeExperimentDescription, writeExperimentRef, writeInteractionType, writeIntraMolecular, writeParticipants, writeXref, writeXrefFromInteractionIdentifiers, writeXrefFromInteractionXrefs

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter
write

- Constructor Detail
  - XmlNamedModelledInteractionWriter
```
public XmlNamedModelledInteractionWriter(PsiXmlVersion version,
                                         XMLStreamWriter writer,
                                         PsiXmlObjectCache objectIndex)
```
    Constructor for XmlNamedModelledInteractionWriter.
    
    Parameters:
    
    version - a PsiXmlVersion object.
    
    writer - a XMLStreamWriter object.
    
    objectIndex - a PsiXmlObjectCache object.
- Method Detail
  - initialiseParticipantWriter
```
protected void initialiseParticipantWriter()
```
    initialiseParticipantWriter.
    
    Overrides:
    
    initialiseParticipantWriter in class XmlModelledInteractionWriter
  - initialiseExperimentWriter
```
protected void initialiseExperimentWriter()
```
    initialiseExperimentWriter.
    
    Overrides:
    
    initialiseExperimentWriter in class AbstractXmlModelledInteractionWriter<ModelledInteraction>