Package psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25

Class XmlBasicInteractionWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter<T,Participant>

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter<I>

psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.AbstractXmlInteractionWriter<Interaction>

psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25.XmlBasicInteractionWriter

All Implemented Interfaces:

CompactPsiXmlElementWriter<Interaction>, PsiXmlElementWriter<Interaction>, PsiXmlExtendedInteractionWriter<Interaction>, PsiXmlInteractionWriter<Interaction>

public class XmlBasicInteractionWriter
extends AbstractXmlInteractionWriter<Interaction>
implements CompactPsiXmlElementWriter<Interaction>

Compact XML 2.5 writer for a basic interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname

Since:

15/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlBasicInteractionWriter(PsiXmlVersion version, XMLStreamWriter writer, PsiXmlObjectCache objectIndex)	Constructor for XmlBasicInteractionWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseParticipantWriter()	initialiseParticipantWriter.
protected CvTerm	writeExperiments(Interaction object)	writeExperiments.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.AbstractXmlInteractionWriter

extractDefaultExperimentsFrom, getAliasWriter, getDefaultExperiments, getXmlInferredInteractionWriter, initialiseExperimentWriter, initialiseInteractionTypeWriter, initialiseXrefWriter, setAliasWriter, setDefaultExperiments, setXmlInferredInteractionWriter, writeExperimentDescription, writeExperimentRef, writeInferredInteractions, writeInteractionType, writeIntraMolecular, writeNames

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter

initialiseInferredInteractionWriter, writeAvailability, writeConfidences, writeModelled, writeNegative, writeOtherAttributes, writeOtherProperties, writeParameters, writeStartInteraction

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter

collectInferredInteractionsFrom, extractDefaultExperimentFrom, getAttributeWriter, getChecksumWriter, getDefaultExperiment, getExperimentWriter, getInferredInteractionWriter, getInteractionTypeWriter, getObjectIndex, getParticipantWriter, getStreamWriter, getVersion, getXrefWriter, initialiseDefaultExperiment, newExperiment, newPublication, newPublication, newXmlCvTerm, setAttributeWriter, setChecksumWriter, setComplexAsInteractor, setDefaultExperiment, setExperimentWriter, setInferredInteractionWriter, setInteractionTypeWriter, setParticipantWriter, setXrefWriter, write, writeAttribute, writeAttributes, writeComplexAsInteractor, writeParticipants, writeXref, writeXrefFromInteractionIdentifiers, writeXrefFromInteractionXrefs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter

write

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlInteractionWriter

extractDefaultExperimentFrom, getDefaultExperiment, setComplexAsInteractor, setDefaultExperiment, writeComplexAsInteractor

Constructor Detail

XmlBasicInteractionWriter

public XmlBasicInteractionWriter(PsiXmlVersion version,
                                 XMLStreamWriter writer,
                                 PsiXmlObjectCache objectIndex)

Constructor for XmlBasicInteractionWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a XMLStreamWriter object.

objectIndex - a PsiXmlObjectCache object.

Method Detail

initialiseParticipantWriter

protected void initialiseParticipantWriter()

initialiseParticipantWriter.

Specified by:

initialiseParticipantWriter in class AbstractXmlInteractionWriter<Interaction,Participant>

writeExperiments

protected CvTerm writeExperiments(Interaction object)
                           throws XMLStreamException

writeExperiments.

Specified by:

writeExperiments in class AbstractXmlInteractionWriter<Interaction,Participant>

Parameters:

object - a T object.

Returns:

a CvTerm object.

Throws:

XMLStreamException - if any.