PsiXmlExtendedInteractionWriter (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

All Superinterfaces:

PsiXmlElementWriter<T>, PsiXmlInteractionWriter<T>

All Known Implementing Classes:

AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionWriter, AbstractXmlModelledInteractionWriter, AbstractXmlModelledInteractionWriter, AbstractXmlModelledInteractionWriter, XmlBasicBinaryInteractionWriter, XmlBasicBinaryInteractionWriter, XmlBasicInteractionWriter, XmlBasicInteractionWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlComplexWriter, XmlComplexWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter
```
public interface PsiXmlExtendedInteractionWriter<T extends Interaction>
extends PsiXmlInteractionWriter<T>
```
Interface for interaction writers writing extensions
Since:
```
20/11/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`List<Experiment>`	`extractDefaultExperimentsFrom(T interaction)`	extractDefaultExperimentsFrom.
`List<Experiment>`	`getDefaultExperiments()`	The default experiments that will be used to write a valid XML file but are not real experiments attached to the interaction.
`void`	`setDefaultExperiments(List<Experiment> exp)`	Sets the default experiments that will be used to write a valid XML file even if the interaction does not have any valid experiment

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter
write

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlInteractionWriter
extractDefaultExperimentFrom, getDefaultExperiment, setComplexAsInteractor, setDefaultExperiment, writeComplexAsInteractor

- Method Detail
  - extractDefaultExperimentsFrom
```
List<Experiment> extractDefaultExperimentsFrom(T interaction)
```
    extractDefaultExperimentsFrom.
    
    Parameters:
    
    interaction - a T object.
    
    Returns:
    
    the default experiments for this interaction
  - getDefaultExperiments
```
List<Experiment> getDefaultExperiments()
```
    The default experiments that will be used to write a valid XML file but are not real experiments attached to the interaction. It cannot be null.
    
    Returns:
    
    a List object.
  - setDefaultExperiments
```
void setDefaultExperiments(List<Experiment> exp)
```
    Sets the default experiments that will be used to write a valid XML file even if the interaction does not have any valid experiment
    
    Parameters:
    
    exp - a List object.
    
    Throws:
    
    IllegalArgumentException - when default experiments is null