Package psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25

Class XmlBasicBinaryInteractionWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter<T,Participant>

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter<I>

psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.AbstractXmlInteractionWriter<BinaryInteraction>

psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25.XmlBasicBinaryInteractionWriter

All Implemented Interfaces:

CompactPsiXmlElementWriter<BinaryInteraction>, PsiXmlElementWriter<BinaryInteraction>, PsiXmlExtendedInteractionWriter<BinaryInteraction>, PsiXmlInteractionWriter<BinaryInteraction>

public class XmlBasicBinaryInteractionWriter
extends AbstractXmlInteractionWriter<BinaryInteraction>
implements CompactPsiXmlElementWriter<BinaryInteraction>

Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details). Interactions are named interactions with a fullname and aliases in addition to a shortname

Since:

15/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlBasicBinaryInteractionWriter(PsiXmlVersion version, XMLStreamWriter writer, PsiXmlObjectCache objectIndex)	Constructor for XmlBasicBinaryInteractionWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseParticipantWriter()	initialiseParticipantWriter.
protected void	writeAttributes(BinaryInteraction object)	writeAttributes.
protected CvTerm	writeExperiments(BinaryInteraction object)	writeExperiments.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.AbstractXmlInteractionWriter

extractDefaultExperimentsFrom, getAliasWriter, getDefaultExperiments, getXmlInferredInteractionWriter, initialiseExperimentWriter, initialiseInteractionTypeWriter, initialiseXrefWriter, setAliasWriter, setDefaultExperiments, setXmlInferredInteractionWriter, writeExperimentDescription, writeExperimentRef, writeInferredInteractions, writeInteractionType, writeIntraMolecular, writeNames

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter

initialiseInferredInteractionWriter, writeAvailability, writeConfidences, writeModelled, writeNegative, writeOtherAttributes, writeOtherProperties, writeParameters, writeStartInteraction

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter

collectInferredInteractionsFrom, extractDefaultExperimentFrom, getAttributeWriter, getChecksumWriter, getDefaultExperiment, getExperimentWriter, getInferredInteractionWriter, getInteractionTypeWriter, getObjectIndex, getParticipantWriter, getStreamWriter, getVersion, getXrefWriter, initialiseDefaultExperiment, newExperiment, newPublication, newPublication, newXmlCvTerm, setAttributeWriter, setChecksumWriter, setComplexAsInteractor, setDefaultExperiment, setExperimentWriter, setInferredInteractionWriter, setInteractionTypeWriter, setParticipantWriter, setXrefWriter, write, writeAttribute, writeComplexAsInteractor, writeParticipants, writeXref, writeXrefFromInteractionIdentifiers, writeXrefFromInteractionXrefs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter

write

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlInteractionWriter

extractDefaultExperimentFrom, getDefaultExperiment, setComplexAsInteractor, setDefaultExperiment, writeComplexAsInteractor

Constructor Detail

XmlBasicBinaryInteractionWriter

public XmlBasicBinaryInteractionWriter(PsiXmlVersion version,
                                       XMLStreamWriter writer,
                                       PsiXmlObjectCache objectIndex)

Constructor for XmlBasicBinaryInteractionWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a XMLStreamWriter object.

objectIndex - a PsiXmlObjectCache object.

Method Detail

initialiseParticipantWriter

protected void initialiseParticipantWriter()

initialiseParticipantWriter.

Specified by:

initialiseParticipantWriter in class AbstractXmlInteractionWriter<BinaryInteraction,Participant>

writeExperiments

protected CvTerm writeExperiments(BinaryInteraction object)
                           throws XMLStreamException

writeExperiments.

Specified by:

writeExperiments in class AbstractXmlInteractionWriter<BinaryInteraction,Participant>

Parameters:

object - a T object.

Returns:

a CvTerm object.

Throws:

XMLStreamException - if any.

writeAttributes

protected void writeAttributes(BinaryInteraction object)
                        throws XMLStreamException

writeAttributes.

Overrides:

writeAttributes in class AbstractXmlInteractionWriter<BinaryInteraction,Participant>

Parameters:

object - a T object.

Throws:

XMLStreamException - if any.