XmlBasicInteractionWriter (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter<T,Participant>
- - psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter<I>
  - - psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.AbstractXmlInteractionWriter<Interaction>
    - - psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25.XmlBasicInteractionWriter

All Implemented Interfaces:

CompactPsiXmlElementWriter<Interaction>, PsiXmlElementWriter<Interaction>, PsiXmlExtendedInteractionWriter<Interaction>, PsiXmlInteractionWriter<Interaction>
```
public class XmlBasicInteractionWriter
extends AbstractXmlInteractionWriter<Interaction>
implements CompactPsiXmlElementWriter<Interaction>
```
Expanded XML 2.5 writer for a basic interaction (ignore experimental details). Interactions are named interactions with a fullname and aliases in addition to a shortname
Since:
```
15/11/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor	Description
`XmlBasicInteractionWriter(PsiXmlVersion version, XMLStreamWriter writer, PsiXmlObjectCache objectIndex)`	Constructor for XmlBasicInteractionWriter.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`initialiseParticipantWriter()`	initialiseParticipantWriter.
`protected CvTerm`	`writeExperiments(Interaction object)`	writeExperiments.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.AbstractXmlInteractionWriter
extractDefaultExperimentsFrom, getAliasWriter, getDefaultExperiments, getXmlInferredInteractionWriter, initialiseExperimentWriter, initialiseInteractionTypeWriter, initialiseXrefWriter, setAliasWriter, setDefaultExperiments, setXmlInferredInteractionWriter, writeExperimentDescription, writeExperimentRef, writeInferredInteractions, writeInteractionType, writeIntraMolecular, writeNames

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter
initialiseInferredInteractionWriter, writeAvailability, writeConfidences, writeModelled, writeNegative, writeOtherAttributes, writeOtherProperties, writeParameters, writeStartInteraction

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter
collectInferredInteractionsFrom, extractDefaultExperimentFrom, getAttributeWriter, getChecksumWriter, getDefaultExperiment, getExperimentWriter, getInferredInteractionWriter, getInteractionTypeWriter, getObjectIndex, getParticipantWriter, getStreamWriter, getVersion, getXrefWriter, initialiseDefaultExperiment, newExperiment, newPublication, newPublication, newXmlCvTerm, setAttributeWriter, setChecksumWriter, setComplexAsInteractor, setDefaultExperiment, setExperimentWriter, setInferredInteractionWriter, setInteractionTypeWriter, setParticipantWriter, setXrefWriter, write, writeAttribute, writeAttributes, writeComplexAsInteractor, writeParticipants, writeXref, writeXrefFromInteractionIdentifiers, writeXrefFromInteractionXrefs

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter
write

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlInteractionWriter
extractDefaultExperimentFrom, getDefaultExperiment, setComplexAsInteractor, setDefaultExperiment, writeComplexAsInteractor

- Constructor Detail
  - XmlBasicInteractionWriter
```
public XmlBasicInteractionWriter(PsiXmlVersion version,
                                 XMLStreamWriter writer,
                                 PsiXmlObjectCache objectIndex)
```
    Constructor for XmlBasicInteractionWriter.
    
    Parameters:
    
    version - a PsiXmlVersion object.
    
    writer - a XMLStreamWriter object.
    
    objectIndex - a PsiXmlObjectCache object.
- Method Detail
  - initialiseParticipantWriter
```
protected void initialiseParticipantWriter()
```
    initialiseParticipantWriter.
    
    Specified by:
    
    initialiseParticipantWriter in class AbstractXmlInteractionWriter<Interaction,Participant>
  - writeExperiments
```
protected CvTerm writeExperiments(Interaction object)
                           throws XMLStreamException
```
    writeExperiments.
    
    Specified by:
    
    writeExperiments in class AbstractXmlInteractionWriter<Interaction,Participant>
    
    Parameters:
    
    object - a T object.
    
    Returns:
    
    a CvTerm object.
    
    Throws:
    
    XMLStreamException - if any.