Package psidev.psi.mi.jami.xml.io.writer.expanded

Class ExpandedXmlNamedModelledWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<ModelledInteraction>

psidev.psi.mi.jami.xml.io.writer.expanded.ExpandedXmlNamedModelledWriter

All Implemented Interfaces:

InteractionWriter<ModelledInteraction>

public class ExpandedXmlNamedModelledWriter
extends AbstractExpandedXmlWriter<ModelledInteraction>

Expanded PSI-XML writer for named abstract interactions (no experimental evidences). Participants, features, experiments also have expanded names

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlNamedModelledWriter(PsiXmlVersion version)	Constructor for ExpandedXmlNamedModelledWriter.
ExpandedXmlNamedModelledWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlNamedModelledWriter.
ExpandedXmlNamedModelledWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlNamedModelledWriter.
ExpandedXmlNamedModelledWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlNamedModelledWriter.
ExpandedXmlNamedModelledWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for ExpandedXmlNamedModelledWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseSubWriters()	initialiseSubWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeComplex, writeInteraction, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlNamedModelledWriter

public ExpandedXmlNamedModelledWriter(PsiXmlVersion version)

Constructor for ExpandedXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlNamedModelledWriter

public ExpandedXmlNamedModelledWriter(PsiXmlVersion version,
                                      File file)
                               throws IOException,
                                      XMLStreamException

Constructor for ExpandedXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlNamedModelledWriter

public ExpandedXmlNamedModelledWriter(PsiXmlVersion version,
                                      OutputStream output)
                               throws XMLStreamException

Constructor for ExpandedXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedModelledWriter

public ExpandedXmlNamedModelledWriter(PsiXmlVersion version,
                                      Writer writer)
                               throws XMLStreamException

Constructor for ExpandedXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedModelledWriter

public ExpandedXmlNamedModelledWriter(PsiXmlVersion version,
                                      XMLStreamWriter streamWriter,
                                      PsiXmlObjectCache cache)

Constructor for ExpandedXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<ModelledInteraction>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<ModelledInteraction>