Package psidev.psi.mi.jami.xml.io.writer.expanded.extended

Class ExpandedXmlBinaryEvidenceWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.expanded.extended.ExpandedXmlBinaryEvidenceWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteractionEvidence>

public class ExpandedXmlBinaryEvidenceWriter
extends AbstractExpandedXmlWriter<BinaryInteractionEvidence>

Expanded PSI-XML writer for expanded binary interaction evidences (full experimental evidences)

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version)	Constructor for ExpandedXmlBinaryEvidenceWriter.
ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlBinaryEvidenceWriter.
ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlBinaryEvidenceWriter.
ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlBinaryEvidenceWriter.
ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache elementCache)	Constructor for ExpandedXmlBinaryEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	writeComplex(ModelledInteraction modelled)	writeComplex.
protected void	writeInteraction()	writeInteraction.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlBinaryEvidenceWriter

public ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version)

Constructor for ExpandedXmlBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlBinaryEvidenceWriter

public ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version,
                                       File file)
                                throws IOException,
                                       XMLStreamException

Constructor for ExpandedXmlBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlBinaryEvidenceWriter

public ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version,
                                       OutputStream output)
                                throws XMLStreamException

Constructor for ExpandedXmlBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlBinaryEvidenceWriter

public ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version,
                                       Writer writer)
                                throws XMLStreamException

Constructor for ExpandedXmlBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

ExpandedXmlBinaryEvidenceWriter

public ExpandedXmlBinaryEvidenceWriter(PsiXmlVersion version,
                                       XMLStreamWriter streamWriter,
                                       PsiXmlObjectCache elementCache)

Constructor for ExpandedXmlBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

elementCache - a PsiXmlObjectCache object.

Method Detail

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<BinaryInteractionEvidence>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<BinaryInteractionEvidence>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<BinaryInteractionEvidence>

writeInteraction

protected void writeInteraction()
                         throws XMLStreamException

writeInteraction.

Overrides:

writeInteraction in class AbstractExpandedXmlWriter<BinaryInteractionEvidence>

Throws:

XMLStreamException - if any.

writeComplex

protected void writeComplex(ModelledInteraction modelled)

writeComplex.

Overrides:

writeComplex in class AbstractExpandedXmlWriter<BinaryInteractionEvidence>

Parameters:

modelled - a ModelledInteraction object.