Package psidev.psi.mi.jami.xml.io.writer.expanded.extended

Class ExpandedXmlBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<I>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.expanded.extended.ExpandedXmlBinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class ExpandedXmlBinaryWriter
extends AbstractExpandedXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

Expanded PSI-XML writer for a mix of expanded binary interactions

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlBinaryWriter(PsiXmlVersion version)	Constructor for ExpandedXmlBinaryWriter.
ExpandedXmlBinaryWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlBinaryWriter.
ExpandedXmlBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlBinaryWriter.
ExpandedXmlBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseDelegateWriters()	initialiseDelegateWriters.
protected void	writeComplex(ModelledInteraction modelled)	writeComplex.
protected void	writeInteraction()	writeInteraction.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlMixWriter

close, flush, getEvidenceWriter, getLightWriter, getModelledWriter, initialiseSubWriters, reset, setComplexWriter, setDefaultReleaseDate, setDefaultSource, setElementCache, setEvidenceWriter, setInteractionSet, setLightWriter, setModelledWriter, setSourceWriter, setVersion, setWriteComplexesAsInteractors, write, write, write

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setCurrentInteraction, setCurrentSource, setEntryAnnotations, setInteractionsIterator, setInteractionWriter, setStarted, setSubWritersFactory, start, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlBinaryWriter

public ExpandedXmlBinaryWriter(PsiXmlVersion version)

Constructor for ExpandedXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlBinaryWriter

public ExpandedXmlBinaryWriter(PsiXmlVersion version,
                               File file)
                        throws IOException,
                               XMLStreamException

Constructor for ExpandedXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlBinaryWriter

public ExpandedXmlBinaryWriter(PsiXmlVersion version,
                               OutputStream output)
                        throws XMLStreamException

Constructor for ExpandedXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlBinaryWriter

public ExpandedXmlBinaryWriter(PsiXmlVersion version,
                               Writer writer)
                        throws XMLStreamException

Constructor for ExpandedXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

Method Detail

initialiseDelegateWriters

protected void initialiseDelegateWriters()

initialiseDelegateWriters.

Specified by:

initialiseDelegateWriters in class AbstractExpandedXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<BinaryInteraction>

writeInteraction

protected void writeInteraction()
                         throws XMLStreamException

writeInteraction.

Overrides:

writeInteraction in class AbstractExpandedXmlWriter<BinaryInteraction>

Throws:

XMLStreamException - if any.

writeComplex

protected void writeComplex(ModelledInteraction modelled)

writeComplex.

Overrides:

writeComplex in class AbstractExpandedXmlWriter<BinaryInteraction>

Parameters:

modelled - a ModelledInteraction object.