Package psidev.psi.mi.jami.xml.io.writer.expanded.extended

Class ExpandedXmlModelledBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<ModelledBinaryInteraction>

psidev.psi.mi.jami.xml.io.writer.expanded.extended.ExpandedXmlModelledBinaryWriter

All Implemented Interfaces:

InteractionWriter<ModelledBinaryInteraction>

public class ExpandedXmlModelledBinaryWriter
extends AbstractExpandedXmlWriter<ModelledBinaryInteraction>

Expanded PSI-XML writer for modelled binary interactions (no experimental evidences)

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlModelledBinaryWriter(PsiXmlVersion version)	Constructor for ExpandedXmlModelledBinaryWriter.
ExpandedXmlModelledBinaryWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlModelledBinaryWriter.
ExpandedXmlModelledBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlModelledBinaryWriter.
ExpandedXmlModelledBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlModelledBinaryWriter.
ExpandedXmlModelledBinaryWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for ExpandedXmlModelledBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	writeComplex(ModelledInteraction modelled)	writeComplex.
protected void	writeInteraction()	writeInteraction.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlModelledBinaryWriter

public ExpandedXmlModelledBinaryWriter(PsiXmlVersion version)

Constructor for ExpandedXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlModelledBinaryWriter

public ExpandedXmlModelledBinaryWriter(PsiXmlVersion version,
                                       File file)
                                throws IOException,
                                       XMLStreamException

Constructor for ExpandedXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlModelledBinaryWriter

public ExpandedXmlModelledBinaryWriter(PsiXmlVersion version,
                                       OutputStream output)
                                throws XMLStreamException

Constructor for ExpandedXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlModelledBinaryWriter

public ExpandedXmlModelledBinaryWriter(PsiXmlVersion version,
                                       Writer writer)
                                throws XMLStreamException

Constructor for ExpandedXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

ExpandedXmlModelledBinaryWriter

public ExpandedXmlModelledBinaryWriter(PsiXmlVersion version,
                                       XMLStreamWriter streamWriter,
                                       PsiXmlObjectCache cache)

Constructor for ExpandedXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<ModelledBinaryInteraction>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<ModelledBinaryInteraction>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<ModelledBinaryInteraction>

writeInteraction

protected void writeInteraction()
                         throws XMLStreamException

writeInteraction.

Overrides:

writeInteraction in class AbstractExpandedXmlWriter<ModelledBinaryInteraction>

Throws:

XMLStreamException - if any.

writeComplex

protected void writeComplex(ModelledInteraction modelled)

writeComplex.

Overrides:

writeComplex in class AbstractExpandedXmlWriter<ModelledBinaryInteraction>

Parameters:

modelled - a ModelledInteraction object.