Package psidev.psi.mi.jami.xml.io.writer.expanded.extended

Class ExpandedXmlModelledWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<ModelledInteraction>

psidev.psi.mi.jami.xml.io.writer.expanded.extended.ExpandedXmlModelledWriter

All Implemented Interfaces:

InteractionWriter<ModelledInteraction>

public class ExpandedXmlModelledWriter
extends AbstractExpandedXmlWriter<ModelledInteraction>

Expanded PSI-XML writer for abstract interactions (no experimental evidences)

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlModelledWriter(PsiXmlVersion version)	Constructor for ExpandedXmlModelledWriter.
ExpandedXmlModelledWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlModelledWriter.
ExpandedXmlModelledWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlModelledWriter.
ExpandedXmlModelledWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlModelledWriter.
ExpandedXmlModelledWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for ExpandedXmlModelledWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	writeComplex(ModelledInteraction modelled)	writeComplex.
protected void	writeInteraction()	writeInteraction.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlModelledWriter

public ExpandedXmlModelledWriter(PsiXmlVersion version)

Constructor for ExpandedXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlModelledWriter

public ExpandedXmlModelledWriter(PsiXmlVersion version,
                                 File file)
                          throws IOException,
                                 XMLStreamException

Constructor for ExpandedXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlModelledWriter

public ExpandedXmlModelledWriter(PsiXmlVersion version,
                                 OutputStream output)
                          throws XMLStreamException

Constructor for ExpandedXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlModelledWriter

public ExpandedXmlModelledWriter(PsiXmlVersion version,
                                 Writer writer)
                          throws XMLStreamException

Constructor for ExpandedXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

ExpandedXmlModelledWriter

public ExpandedXmlModelledWriter(PsiXmlVersion version,
                                 XMLStreamWriter streamWriter,
                                 PsiXmlObjectCache cache)

Constructor for ExpandedXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<ModelledInteraction>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<ModelledInteraction>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<ModelledInteraction>

writeInteraction

protected void writeInteraction()
                         throws XMLStreamException

writeInteraction.

Overrides:

writeInteraction in class AbstractExpandedXmlWriter<ModelledInteraction>

Throws:

XMLStreamException - if any.

writeComplex

protected void writeComplex(ModelledInteraction modelled)

writeComplex.

Overrides:

writeComplex in class AbstractExpandedXmlWriter<ModelledInteraction>

Parameters:

modelled - a ModelledInteraction object.