Package psidev.psi.mi.jami.xml.listener

Class PsiXmlParserCompositeListener

java.lang.Object

psidev.psi.mi.jami.listener.impl.MIFileParserCompositeListener<PsiXmlParserListener>

psidev.psi.mi.jami.xml.listener.PsiXmlParserCompositeListener

All Implemented Interfaces:

MIFileParserListener, PsiXmlParserListener

public class PsiXmlParserCompositeListener
extends MIFileParserCompositeListener<PsiXmlParserListener>
implements PsiXmlParserListener

This class contains several MI file listeners

Since:

13/12/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
PsiXmlParserCompositeListener()	Constructor for PsiXmlParserCompositeListener.

Method Summary

Modifier and Type	Method	Description
void	onSeveralExperimentalRolesFound(Collection<CvTerm> roles, FileSourceLocator locator)	onSeveralExperimentalRolesFound.
void	onSeveralExperimentsFound(Collection<Experiment> experiments, FileSourceLocator locator)	onSeveralExperimentsFound.
void	onSeveralExpressedInOrganismFound(Collection<Organism> organisms, FileSourceLocator locator)	onSeveralExpressedInOrganismFound.
void	onSeveralHostOrganismFound(Collection<Organism> organisms, FileSourceLocator locator)	onSeveralHostOrganismFound.
void	onUnresolvedReference(XmlIdReference ref, String message)	onUnresolvedReference.

Methods inherited from class psidev.psi.mi.jami.listener.impl.MIFileParserCompositeListener

getDelegates, onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSyntaxWarning, onXrefWithoutDatabase, onXrefWithoutId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.listener.MIFileParserListener

onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSyntaxWarning, onXrefWithoutDatabase, onXrefWithoutId

Constructor Detail

PsiXmlParserCompositeListener

public PsiXmlParserCompositeListener()

Constructor for PsiXmlParserCompositeListener.

Method Detail

onUnresolvedReference

public void onUnresolvedReference(XmlIdReference ref,
                                  String message)

onUnresolvedReference.

Specified by:

onUnresolvedReference in interface PsiXmlParserListener

Parameters:

ref - a XmlIdReference object.

message - a String object.

onSeveralHostOrganismFound

public void onSeveralHostOrganismFound(Collection<Organism> organisms,
                                       FileSourceLocator locator)

onSeveralHostOrganismFound.

Specified by:

onSeveralHostOrganismFound in interface PsiXmlParserListener

Parameters:

organisms - a Collection object.

locator - a FileSourceLocator object.

onSeveralExpressedInOrganismFound

public void onSeveralExpressedInOrganismFound(Collection<Organism> organisms,
                                              FileSourceLocator locator)

onSeveralExpressedInOrganismFound.

Specified by:

onSeveralExpressedInOrganismFound in interface PsiXmlParserListener

Parameters:

organisms - a Collection object.

locator - a FileSourceLocator object.

onSeveralExperimentalRolesFound

public void onSeveralExperimentalRolesFound(Collection<CvTerm> roles,
                                            FileSourceLocator locator)

onSeveralExperimentalRolesFound.

Specified by:

onSeveralExperimentalRolesFound in interface PsiXmlParserListener

Parameters:

roles - a Collection object.

locator - a FileSourceLocator object.

onSeveralExperimentsFound

public void onSeveralExperimentsFound(Collection<Experiment> experiments,
                                      FileSourceLocator locator)

onSeveralExperimentsFound.

Specified by:

onSeveralExperimentsFound in interface PsiXmlParserListener

Parameters:

experiments - a Collection object.

locator - a FileSourceLocator object.