Class XmlBinaryInteraction
- java.lang.Object
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- psidev.psi.mi.jami.model.impl.AbstractInteraction<T>
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- psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction<P>
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- psidev.psi.mi.jami.xml.model.extension.binary.AbstractExtendedXmlBinaryInteraction<Participant>
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- psidev.psi.mi.jami.xml.model.extension.binary.XmlBinaryInteraction
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- All Implemented Interfaces:
BinaryInteraction<Participant>
,FileSourceContext
,Interaction<Participant>
,NamedInteraction<Participant>
,ExtendedPsiXmlInteraction<Participant>
,PsiXmlInteraction<Participant>
public class XmlBinaryInteraction extends AbstractExtendedXmlBinaryInteraction<Participant>
Xml implementation of binary interaction- Since:
16/10/13
- Version:
- $Id$
- Author:
- Marine Dumousseau (marine@ebi.ac.uk)
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Constructor Summary
Constructors Constructor Description XmlBinaryInteraction()
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(String shortName)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(String shortName, CvTerm type)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(String shortName, CvTerm type, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(String shortName, Participant participantA, Participant participantB)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(Participant participantA, Participant participantB)
Constructor for XmlBinaryInteraction.XmlBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.
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Method Summary
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Methods inherited from class psidev.psi.mi.jami.xml.model.extension.binary.AbstractExtendedXmlBinaryInteraction
getAliases, getEntry, getFullName, getId, getInferredInteractions, getInteractionType, getInteractionTypes, getSourceLocator, isIntraMolecular, setEntry, setFullName, setId, setInteractionType, setIntraMolecular, setSourceLocator, toString
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Methods inherited from class psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction
addAllParticipants, addParticipant, getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, getParticipants, removeAllParticipants, removeParticipant, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB
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Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractInteraction
clearPropertiesLinkedToChecksums, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseChecksums, initialiseChecksumWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseParticipants, initialiseParticipantsWith, initialiseXrefs, initialiseXrefsWith, processAddedChecksumEvent, processRemovedChecksumEvent, setCreatedDate, setRigid, setShortName, setUpdatedDate
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface psidev.psi.mi.jami.model.Interaction
addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setRigid, setShortName, setUpdatedDate
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Constructor Detail
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XmlBinaryInteraction
public XmlBinaryInteraction()
Constructor for XmlBinaryInteraction.
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XmlBinaryInteraction
public XmlBinaryInteraction(String shortName)
Constructor for XmlBinaryInteraction.
- Parameters:
shortName
- aString
object.
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XmlBinaryInteraction
public XmlBinaryInteraction(String shortName, CvTerm type)
Constructor for XmlBinaryInteraction.
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XmlBinaryInteraction
public XmlBinaryInteraction(Participant participantA, Participant participantB)
Constructor for XmlBinaryInteraction.
- Parameters:
participantA
- aParticipant
object.participantB
- aParticipant
object.
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XmlBinaryInteraction
public XmlBinaryInteraction(String shortName, Participant participantA, Participant participantB)
Constructor for XmlBinaryInteraction.
- Parameters:
shortName
- aString
object.participantA
- aParticipant
object.participantB
- aParticipant
object.
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XmlBinaryInteraction
public XmlBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)
Constructor for XmlBinaryInteraction.
- Parameters:
shortName
- aString
object.type
- aCvTerm
object.participantA
- aParticipant
object.participantB
- aParticipant
object.
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XmlBinaryInteraction
public XmlBinaryInteraction(CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.
- Parameters:
complexExpansion
- aCvTerm
object.
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XmlBinaryInteraction
public XmlBinaryInteraction(String shortName, CvTerm type, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.
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XmlBinaryInteraction
public XmlBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.
- Parameters:
participantA
- aParticipant
object.participantB
- aParticipant
object.complexExpansion
- aCvTerm
object.
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XmlBinaryInteraction
public XmlBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.
- Parameters:
shortName
- aString
object.participantA
- aParticipant
object.participantB
- aParticipant
object.complexExpansion
- aCvTerm
object.
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XmlBinaryInteraction
public XmlBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)
Constructor for XmlBinaryInteraction.
- Parameters:
shortName
- aString
object.type
- aCvTerm
object.participantA
- aParticipant
object.participantB
- aParticipant
object.complexExpansion
- aCvTerm
object.
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