Package psidev.psi.mi.jami.xml.model.extension.xml254

Class DefaultXmlExperiment

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlExperiment

psidev.psi.mi.jami.xml.model.extension.xml254.DefaultXmlExperiment

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Experiment, NamedExperiment, ExtendedPsiXmlExperiment

public class DefaultXmlExperiment
extends AbstractXmlExperiment

Xml im

Since:

25/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlExperiment

AbstractXmlExperiment.JAXBAttributeWrapper, AbstractXmlExperiment.JAXBConfidenceWrapper, AbstractXmlExperiment.JAXBHostOrganismWrapper, AbstractXmlExperiment.JAXBVariableParameterWrapper

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlExperiment

locator

Fields inherited from interface psidev.psi.mi.jami.model.Experiment

INFERRED_BY_CURATOR, INFERRED_BY_CURATOR_MI, UNSPECIFIED_METHOD, UNSPECIFIED_METHOD_MI

Constructor Summary

Constructors

Constructor	Description
DefaultXmlExperiment()	Constructor for DefaultXmlExperiment.
DefaultXmlExperiment(Publication publication)	Constructor for DefaultXmlExperiment.
DefaultXmlExperiment(Publication publication, CvTerm interactionDetectionMethod)	Constructor for DefaultXmlExperiment.
DefaultXmlExperiment(Publication publication, CvTerm interactionDetectionMethod, Organism organism)	Constructor for DefaultXmlExperiment.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseFullNameFromPublication(BibRef publication)	initialiseFullNameFromPublication.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlExperiment

addAllInteractionEvidences, addAllVariableParameters, addInteractionEvidence, addVariableParameter, getAliases, getAnnotations, getConfidences, getExperimentNamesContainer, getFeatureDetectionMethod, getFullName, getHostOrganism, getHostOrganisms, getId, getInteractionDetectionMethod, getInteractionEvidences, getParticipantIdentificationMethod, getPublication, getShortName, getSourceLocator, getVariableParameters, getXrefs, initialiseAnnotationWrapper, initialiseConfidenceWrapper, initialiseInteractions, initialiseVariableParameters, removeAllInteractionEvidences, removeAllVariableParameters, removeInteractionEvidence, removeVariableParameter, setExperimentNamesContainer, setExperimentXrefContainer, setFeatureDetectionMethod, setFullName, setHostOrganism, setId, setInteractionDetectionMethod, setJAXBAttributeWrapper, setJAXBConfidenceWrapper, setJAXBHostOrganismWrapper, setJAXBId, setJAXBInteractionDetectionMethod, setJAXBPublication, setJAXBVariableParameterValuesWrapper, setParticipantIdentificationMethod, setPublication, setPublicationAndAddExperiment, setShortName, setSourceLocator, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DefaultXmlExperiment

public DefaultXmlExperiment()

Constructor for DefaultXmlExperiment.

DefaultXmlExperiment

public DefaultXmlExperiment(Publication publication)

Constructor for DefaultXmlExperiment.

Parameters:

publication - a Publication object.

DefaultXmlExperiment

public DefaultXmlExperiment(Publication publication,
                            CvTerm interactionDetectionMethod)

Constructor for DefaultXmlExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

DefaultXmlExperiment

public DefaultXmlExperiment(Publication publication,
                            CvTerm interactionDetectionMethod,
                            Organism organism)

Constructor for DefaultXmlExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

organism - a Organism object.

Method Detail

initialiseFullNameFromPublication

protected void initialiseFullNameFromPublication(BibRef publication)

initialiseFullNameFromPublication.

Specified by:

initialiseFullNameFromPublication in class AbstractXmlExperiment

Parameters:

publication - a BibRef object.