Package psidev.psi.mi.jami.xml.model.extension

Interface ExtendedPsiXmlExperiment

All Superinterfaces:

Experiment, NamedExperiment

All Known Implementing Classes:

AbstractExperimentRef, AbstractExperimentRef, AbstractExperimentRef, AbstractXmlExperiment, AbstractXmlExperiment, AbstractXmlExperiment, DefaultXmlExperiment, DefaultXmlExperiment, DefaultXmlExperiment, XmlExperiment, XmlExperiment, XmlExperiment

public interface ExtendedPsiXmlExperiment
extends NamedExperiment

Extended experiment for PSI-XML 2,5 standards

Since:

30/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Experiment

INFERRED_BY_CURATOR, INFERRED_BY_CURATOR_MI, UNSPECIFIED_METHOD, UNSPECIFIED_METHOD_MI

Method Summary

Modifier and Type	Method	Description
CvTerm	getFeatureDetectionMethod()	getFeatureDetectionMethod.
List<Organism>	getHostOrganisms()	getHostOrganisms.
int	getId()	getId.
CvTerm	getParticipantIdentificationMethod()	getParticipantIdentificationMethod.
void	setFeatureDetectionMethod(CvTerm method)	setFeatureDetectionMethod.
void	setId(int id)	setId.
void	setParticipantIdentificationMethod(CvTerm method)	setParticipantIdentificationMethod.

Methods inherited from interface psidev.psi.mi.jami.model.Experiment

addAllInteractionEvidences, addAllVariableParameters, addInteractionEvidence, addVariableParameter, getAnnotations, getConfidences, getHostOrganism, getInteractionDetectionMethod, getInteractionEvidences, getPublication, getVariableParameters, getXrefs, removeAllInteractionEvidences, removeAllVariableParameters, removeInteractionEvidence, removeVariableParameter, setHostOrganism, setInteractionDetectionMethod, setPublication, setPublicationAndAddExperiment

Methods inherited from interface psidev.psi.mi.jami.model.NamedExperiment

getAliases, getFullName, getShortName, setFullName, setShortName

Method Detail

getId

int getId()

getId.

Returns:

a int.

setId

void setId(int id)

setId.

Parameters:

id - a int.

getHostOrganisms

List<Organism> getHostOrganisms()

getHostOrganisms.

Returns:

a List object.

getParticipantIdentificationMethod

CvTerm getParticipantIdentificationMethod()

getParticipantIdentificationMethod.

Returns:

a CvTerm object.

setParticipantIdentificationMethod

void setParticipantIdentificationMethod(CvTerm method)

setParticipantIdentificationMethod.

Parameters:

method - a CvTerm object.

getFeatureDetectionMethod

CvTerm getFeatureDetectionMethod()

getFeatureDetectionMethod.

Returns:

a CvTerm object.

setFeatureDetectionMethod

void setFeatureDetectionMethod(CvTerm method)

setFeatureDetectionMethod.

Parameters:

method - a CvTerm object.