java.lang.Object
- psidev.psi.mi.jami.xml.model.extension.xml300.XrefContainer
- - psidev.psi.mi.jami.xml.model.extension.xml300.PublicationXrefContainer

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext
```
public class PublicationXrefContainer
extends XrefContainer
```
Xref container for a Publication
Since:
```
22/07/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor Description

PublicationXrefContainer()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`assignImexId(String identifier)`	assignImexId.
`protected void`	`clearImexId()`	clearImexId.
`protected void`	`clearPropertiesLinkedToIdentifiers()`	clearPropertiesLinkedToIdentifiers.
`String`	`getDoi()`	Getter for the field `doi`.
`Collection<Xref>`	`getIdentifiers()`	Getter for the field `identifiers`.
`String`	`getImexId()`	Getter for the field `imexId`.
`String`	`getPubmedId()`	Getter for the field `pubmedId`.
`protected void`	`initialiseIdentifiers()`	initialiseIdentifiers.
`protected void`	`initialiseSecondaryRefs()`	initialiseSecondaryRefs.
`protected void`	`initialiseXrefs()`	initialiseXrefs.
`protected void`	`processAddedIdentifierEvent(Xref added)`	processAddedIdentifierEvent.
`protected void`	`processAddedPotentialImex(Xref added)`	processAddedPotentialImex.
`protected void`	`processAddedPrimaryRef(Xref added)`	processAddedPrimaryRef.
`protected void`	`processRemovedIdentifierEvent(Xref removed)`	processRemovedIdentifierEvent.
`protected void`	`processRemovedPotentialImex(Xref removed)`	processRemovedPotentialImex.
`void`	`setDoi(String doi)`	Setter for the field `doi`.
`void`	`setPubmedId(String pubmedId)`	Setter for the field `pubmedId`.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.XrefContainer
getJAXBSecondaryRefs, getSourceLocator, getXrefs, initialiseSecondaryResWith, initialiseXrefsWith, isEmpty, setJAXBPrimaryRef, setSourceLocator, sourceLocation, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - PublicationXrefContainer
```
public PublicationXrefContainer()
```
- Method Detail
  - processAddedPrimaryRef
```
protected void processAddedPrimaryRef(Xref added)
```
    processAddedPrimaryRef.
    
    Overrides:
    
    processAddedPrimaryRef in class XrefContainer
    
    Parameters:
    
    added - a Xref object.
  - getIdentifiers
```
public Collection<Xref> getIdentifiers()
```
    Getter for the field identifiers.
    
    Returns:
    
    a Collection object.
  - getPubmedId
```
public String getPubmedId()
```
    Getter for the field pubmedId.
    
    Returns:
    
    a String object.
  - setPubmedId
```
public void setPubmedId(String pubmedId)
```
    Setter for the field pubmedId.
    
    Parameters:
    
    pubmedId - a String object.
  - getDoi
```
public String getDoi()
```
    Getter for the field doi.
    
    Returns:
    
    a String object.
  - setDoi
```
public void setDoi(String doi)
```
    Setter for the field doi.
    
    Parameters:
    
    doi - a String object.
  - getImexId
```
public String getImexId()
```
    Getter for the field imexId.
    
    Returns:
    
    a String object.
  - assignImexId
```
public void assignImexId(String identifier)
```
    assignImexId.
    
    Parameters:
    
    identifier - a String object.
  - processAddedIdentifierEvent
```
protected void processAddedIdentifierEvent(Xref added)
```
    processAddedIdentifierEvent.
    
    Parameters:
    
    added - a Xref object.
  - processRemovedIdentifierEvent
```
protected void processRemovedIdentifierEvent(Xref removed)
```
    processRemovedIdentifierEvent.
    
    Parameters:
    
    removed - a Xref object.
  - clearPropertiesLinkedToIdentifiers
```
protected void clearPropertiesLinkedToIdentifiers()
```
    clearPropertiesLinkedToIdentifiers.
  - processAddedPotentialImex
```
protected void processAddedPotentialImex(Xref added)
```
    processAddedPotentialImex.
    
    Parameters:
    
    added - a Xref object.
  - processRemovedPotentialImex
```
protected void processRemovedPotentialImex(Xref removed)
```
    processRemovedPotentialImex.
    
    Parameters:
    
    removed - a Xref object.
  - clearImexId
```
protected void clearImexId()
```
    clearImexId.
  - initialiseIdentifiers
```
protected void initialiseIdentifiers()
```
    initialiseIdentifiers.
  - initialiseXrefs
```
protected void initialiseXrefs()
```
    initialiseXrefs.
    
    Overrides:
    
    initialiseXrefs in class XrefContainer
  - initialiseSecondaryRefs
```
protected void initialiseSecondaryRefs()
```
    initialiseSecondaryRefs.
    
    Overrides:
    
    initialiseSecondaryRefs in class XrefContainer

Class PublicationXrefContainer

Constructor Summary

Method Summary

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.XrefContainer

Methods inherited from class java.lang.Object

Constructor Detail

PublicationXrefContainer

Method Detail

processAddedPrimaryRef

getIdentifiers

getPubmedId

setPubmedId

getDoi

setDoi

getImexId

assignImexId

processAddedIdentifierEvent

processRemovedIdentifierEvent

clearPropertiesLinkedToIdentifiers

processAddedPotentialImex

processRemovedPotentialImex

clearImexId

initialiseIdentifiers

initialiseXrefs

initialiseSecondaryRefs